PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29676.m001705
Common NameRCOM_0604460
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family TALE
Protein Properties Length: 562aa    MW: 60532 Da    PI: 8.4805
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29676.m001705genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox19.41.8e-063163403054
                    HHHHHHHCTS-HHHHHHHHHHHHHH CS
       Homeobox  30 reeLAkklgLterqVkvWFqNrRak 54 
                    +  LA+++gL+ +qV++WF N R +
  29676.m001705 316 KHLLARQTGLSRNQVSNWFINARVR 340
                    5679*******************88 PP
2BELL122.12.3e-39166237172
           BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                    +r e+q++k+kLls+l+eVd+rY++y+eq+q+v++sF+ v+g g+a pYtslA+ka+SrhFrcLkdai  q+
  29676.m001705 166 DRIEHQRRKVKLLSMLDEVDRRYNHYCEQMQMVVNSFDLVMGFGAAVPYTSLAQKAMSRHFRCLKDAIGAQL 237
                    589*****************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005747.2E-8288235IPR006563POX domain
PfamPF075261.8E-5293233IPR006563POX domain
PROSITE profilePS5007110.203284344IPR001356Homeobox domain
CDDcd000861.05E-9287345No hitNo description
SMARTSM003894.3E-6287348IPR001356Homeobox domain
SuperFamilySSF466891.97E-12288352IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.0E-22290350IPR009057Homeodomain-like
PfamPF059204.8E-11304340IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009965Biological Processleaf morphogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 562 aa     Download sequence    Send to blast
IASIVEGQGL SLSLSSSLQH LEAVKAEELR MGEGGLLYYN HQTGGSGSSS APYYKNLSGQ  60
HQAALHLQPG GVGVGQNHQV HVGYGSSLGV VNVLRNSKYI KAAQELLEEF CSVGRGQFKK  120
NKFSRQSTNP SSNNPGGNSS GGGSGGGGGG GSSSSTKDFP PLSASDRIEH QRRKVKLLSM  180
LDEVDRRYNH YCEQMQMVVN SFDLVMGFGA AVPYTSLAQK AMSRHFRCLK DAIGAQLKHS  240
CELLGEKDGA GTSGITKGET PRLRLLEQSL RQQRAFHQMG MMEQEAWRPQ RGLPERSVNI  300
LRAWLFEHFL HPDADKHLLA RQTGLSRNQV SNWFINARVR LWKPMVEEMY QQESKDEDGE  360
DRGHQSKQNS SSNNNNNNNN TSGQLAQTST PTTTNTNTST TPTASSSPTI TTPKSNTPTP  420
ASAASKRSDI GNENDPSHLL AMNRQCFSEN QATNTTSTTI ITPTINTTTT EMVAPPLASP  480
HGHQPFHDLA DDICRRGSIV TGDYGTTGSA AGADHIGSTL IRFGTTTAAA GDVSLTLGLR  540
HAGNMPEKNT ASAFSVRDFG NC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1139151SGGGSGGGGGGGS
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression.
Cis-element ? help Back to Top
SourceLink
PlantRegMap29676.m001705
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015576757.10.0BEL1-like homeodomain protein 4
SwissprotQ9SW801e-144BLH2_ARATH; BEL1-like homeodomain protein 2
TrEMBLB9S8S70.0B9S8S7_RICCO; Bel1 homeotic protein, putative (Fragment)
STRINGXP_002522396.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35243257
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36870.21e-132BEL1-like homeodomain 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]