PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29679.m000378
Common NameRCOM_0606750
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family NAC
Protein Properties Length: 508aa    MW: 57579.9 Da    PI: 4.1704
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29679.m000378genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM74.91.9e-23131411128
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiy.kvePwdLpkkvkaeek.ewyfFskrdkkyatgkrknr..atksgyWkatgkdkev 92 
                    lppG+rF+Ptd+elv +yL ++v++k+l+++ +i+e+diy ++ePw++  ++ + ++  +y F++ +k++a+g+   r    + g W+   + ke 
  29679.m000378  13 LPPGYRFDPTDQELVLHYLLNRVARKPLSCQYFISEIDIYgDMEPWQIWDSLGKADNdVLYVFTPLKKRAANGSTILRriGSNGGSWHGEDSGKEF 108
                    79****************************888******9457*****855555555266************9988773346699****9999999 PP

            NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                    +   + +++++k + +  +r+ k++   W+m+ey+l
  29679.m000378 109 KL--NGVKWTQKRFRYE-NRKCKPHDGAWLMQEYSL 141
                    99..5578999999986.899999**********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.75E-278167IPR003441NAC domain
PROSITE profilePS5100527.10413168IPR003441NAC domain
PfamPF023651.8E-1514141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 508 aa     Download sequence    Send to blast
MDMERDNQEA LILPPGYRFD PTDQELVLHY LLNRVARKPL SCQYFISEID IYGDMEPWQI  60
WDSLGKADND VLYVFTPLKK RAANGSTILR RIGSNGGSWH GEDSGKEFKL NGVKWTQKRF  120
RYENRKCKPH DGAWLMQEYS LDQSLVNKIK EKRNDDNEII VLCRIKKNER IKKSRQSEGG  180
GDEALYADNG VDRTAEASKI GFKRLRIDHF VSENQEVQRK TLTNDGLFSV MEEIRTPATT  240
QQFYARDTNE TVLERQRLPG DSYATAIDQN IPENQELQGE TLTHGGLFSV MEETGTPATT  300
EPFYSREINE TVLECQRLPE DSSTNPFYTG GIDQTIPENQ ELQGNSLNMD GLFTMEDACL  360
PATTVPFYAR DINQTVLEYQ QLPGETSTGP LYAGGIDQIA PEIQQLQGNS LDNDGLFCNK  420
EEALLPATIH QLDNEEEEVE FVNSLPQNTS SLIMQEGQVT ETDVCIAANT EPCNVAEEQD  480
SGTPDEDMEF MNCLLFEDDP PLVWSPLY
Cis-element ? help Back to Top
SourceLink
PlantRegMap29679.m000378
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB9SYA20.0B9SYA2_RICCO; Transcription factor, putative
STRINGXP_002530971.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55724133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01720.12e-18NAC family protein