PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

29680.m001715

Common Name

RCOM_0609810

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

ZF-HD

Protein Properties

Length: 160aa MW: 18049.1 Da PI: 7.9515

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
29680.m001715	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	94.3	1e-29	22	76	3	58
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 +++YkeC +NhA+ +Gg+a DGCgEf+p+ g +gt +al C AC+CHRnFHR+e 29680.m001715 22 TIQYKECWRNHAVLIGGYAADGCGEFIPK-GGQGTRDALLCEACDCHRNFHRKELI 76 789***********************9.8889*****************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	3.0E-16	20	75	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	7.0E-28	23	74	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	2.8E-26	24	74	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	24.115	25	74	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Sequence ? help Back to Top
Protein Sequence Length: 160 aa Download sequence Send to blast
MANTDSNSSS KTFNQESEER TTIQYKECWR NHAVLIGGYA ADGCGEFIPK GGQGTRDALL 60 CEACDCHRNF HRKELIKNGI ALLGSHHIPT PLGWRKRDVH GSYPFPSALS QPSFSPGHHH 120 YHYSQKKMQD MVSDEESVFY SGSQGEMEMK ASKRTKRETL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	29680.m001715

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015576566.1	2e-91	zinc-finger homeodomain protein 5
TrEMBL	B9S7M8	1e-118	B9S7M8_RICCO; Transcription factor, putative
STRING	XP_002521997.1	1e-119	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF17111	6	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02540.1	3e-22	homeobox protein 21

Link Out ? help Back to Top
Phytozome	29680.m001715