PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29680.m001737
Common NameLOC8258667, RCOM_0610630
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family ERF
Protein Properties Length: 215aa    MW: 23562.7 Da    PI: 5.1227
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29680.m001737genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.73.5e-193281255
            AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                    y+GVr++  +g+WvAeIr+p   + r  r++lg+f t  eAaka+++a+ kl+g
  29680.m001737 32 TYRGVRQRT-WGKWVAEIREP---N-RgNRIWLGTFNTSHEAAKAYDQAAIKLYG 81
                   69****999.**********8...2.359***********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.75E-303191No hitNo description
SuperFamilySSF541717.19E-223291IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.4E-313291IPR001471AP2/ERF domain
SMARTSM003802.2E-363295IPR001471AP2/ERF domain
PfamPF008473.8E-143281IPR001471AP2/ERF domain
PROSITE profilePS5103222.513289IPR001471AP2/ERF domain
PRINTSPR003672.7E-103344IPR001471AP2/ERF domain
PRINTSPR003672.7E-105571IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MEKEATDKKV TMRRSRKGCM KGKGGPENAL CTYRGVRQRT WGKWVAEIRE PNRGNRIWLG  60
TFNTSHEAAK AYDQAAIKLY GSSATLNLPH SYDQQRQRQE EEEEEEVPFS NRSTTPLSSS  120
FASACPDYVG TCGGSTNSSC RDQPSATNLF LSSIGADASG CGISGGEGSS GDINAYWPDF  180
GFGENYHFLE TNDFGVAAMG GEGFNWDGSR DLWSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1933931576Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00519DAPTransfer from AT5G18450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap29680.m001737
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002522019.11e-160dehydration-responsive element-binding protein 2D
TrEMBLB9S7Q01e-159B9S7Q0_RICCO; Uncharacterized protein
STRINGXP_002522019.11e-160(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25623380
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18450.11e-43ERF family protein