PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

29686.m000865

Common Name

LOC8277201, RCOM_0621370

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

NAC

Protein Properties

Length: 320aa MW: 36278.2 Da PI: 5.4405

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
29686.m000865	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	65	2.3e-20	12	137	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykv.ePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppG+rF+P+ eel++ +L+kk++g++l+ +++ evd+y ePw + +++ + f++ ++ k+ +g+r +r++ g+W+ + +d v ++ 29686.m000865 12 LPPGYRFQPSVEELINVFLRKKLNGETLPH-DTLFEVDLYGDkEPWMIF----NKDLQQTFYVFTHLKNISGSRIKRTAGCGTWEGQKTD-GVRDS 101 79************************99.8899997549*6....234455566666677789**********88765.56666 PP NAM 96 kgelvglkktLvfykgrapkge...ktdWvmheyrl 128 g+l+g +k L f ++a+++ + +W+mhe+++ 29686.m000865 102 MGQLIGFQKLLSFEVAEAHSSIargNGRWIMHEFSI 137 99*******955554443334889****86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.4E-24	6	151	IPR003441	NAC domain
PROSITE profile	PS51005	25.538	12	151	IPR003441	NAC domain
Pfam	PF02365	6.9E-16	13	137	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 320 aa Download sequence Send to blast
MKTPPPAAVF RLPPGYRFQP SVEELINVFL RKKLNGETLP HDTLFEVDLY GDKEPWMIFN 60 KDLQQTFYVF THLKNISGSR IKRTAGCGTW EGQKTDGVRD SMGQLIGFQK LLSFEVAEAH 120 SSIARGNGRW IMHEFSIRRD DKYVLCRVRN KELDKAKPMA SLEVDESEEV HARKCGQGDD 180 DENHSRKRLR EGEFGGSNLC FPVVVCQGTA YQGFDCRPLS LQRGNNPQQS QTNTENVYYD 240 DDVSCRGADE GTVKQEFDRQ TIEGGNNDLH TNTNNVHGSN NLQHSNTNTS NVHEESATLE 300 TWLKELDTVL DSSETLKTIE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-20	6	152	11	166	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-20	6	152	11	166	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-20	6	152	11	166	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-20	6	152	11	166	NO APICAL MERISTEM PROTEIN
3swm_A	2e-20	6	152	14	169	NAC domain-containing protein 19
3swm_B	2e-20	6	152	14	169	NAC domain-containing protein 19
3swm_C	2e-20	6	152	14	169	NAC domain-containing protein 19
3swm_D	2e-20	6	152	14	169	NAC domain-containing protein 19
3swp_A	2e-20	6	152	14	169	NAC domain-containing protein 19
3swp_B	2e-20	6	152	14	169	NAC domain-containing protein 19
3swp_C	2e-20	6	152	14	169	NAC domain-containing protein 19
3swp_D	2e-20	6	152	14	169	NAC domain-containing protein 19
4dul_A	2e-20	6	152	11	166	NAC domain-containing protein 19
4dul_B	2e-20	6	152	11	166	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	29686.m000865

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002525549.1	0.0	NAC domain-containing protein 41
TrEMBL	B9SHT0	0.0	B9SHT0_RICCO; Uncharacterized protein
STRING	XP_002525549.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF16532	3	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52890.1	5e-22	NAC domain containing protein 19

Link Out ? help Back to Top
Phytozome	29686.m000865
Entrez Gene	8277201