PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29693.m001968
Common NameLOC8262273, RCOM_0631030
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family TCP
Protein Properties Length: 497aa    MW: 53901 Da    PI: 7.6227
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29693.m001968genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP115.76.2e-36892472135
            TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...................ssssasec..eae 76 
                     g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG+d++sk++eWL+++a  +i el+++                   ++++a ++   + 
  29693.m001968  89 SGGKDRHSKVWTSKGLRDRRVRLSVTTAIQFYDLQDRLGYDQPSKAVEWLIKAAADSINELPSLngsfpdtpkqlsdekrtsdGTEQAFDSadVEL 184
                    689*************************************************************98777666655555544442222222222111 PP

            TCP  77 sssssasnsssgkaaksaakskksqksaasalnlak....esrakarararertrekmriknk 135
                    ++ + ++n++++ + +++a+s+ s++s+ s l+l +      r kar+rarer ++++ ++n+
  29693.m001968 185 EDPNFNQNQNQHLSLSKSACSSTSDTSKGSGLSLLRsdirVNRVKARERARERAAKEKEKENE 247
                    1111112222233334444444444444444444443233666*********66665555544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.1E-4290244IPR005333Transcription factor, TCP
PROSITE profilePS5136931.42291149IPR017887Transcription factor TCP subgroup
PROSITE profilePS513709.946224242IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:1903508Biological Processpositive regulation of nucleic acid-templated transcription
GO:2000306Biological Processpositive regulation of photomorphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    Send to blast
MEVEEIQTQP PCKFPRVGSN GRSDTTKIGQ KGSNNTGTDH NQYPDEEEDG ELIKRPNLGT  60
GAGGDAGSAN NRLREWHHSS RIIRVARASG GKDRHSKVWT SKGLRDRRVR LSVTTAIQFY  120
DLQDRLGYDQ PSKAVEWLIK AAADSINELP SLNGSFPDTP KQLSDEKRTS DGTEQAFDSA  180
DVELEDPNFN QNQNQHLSLS KSACSSTSDT SKGSGLSLLR SDIRVNRVKA RERARERAAK  240
EKEKENESRN AAHQQNMNQP ISQNSTFTEL LTGGISSVSN SNNNNAAAAA TSPSGSEVNL  300
FHHKAAAAAT ARQWPLIPMD YFGGTGLLGP SSSRTAHQSS GFPGQIQLGN SISQAMTMSI  360
PPFNFSGESH HQEQQQLQHF PFVSDHLIPV ATTQSSCPGG DYNLNFTISS GLAGFNRGTL  420
QSNSSSHSLL MPHLQRFSSS SPIDGSTNVP FFIGAANAAA PSPPPMENHH HYHQFPPGLH  480
LYGDGSRHSD QKGKGKN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-2496150155Putative transcription factor PCF6
5zkt_B2e-2496150155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00006PBMTransfer from 493022Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap29693.m001968
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002519642.10.0transcription factor TCP2
RefseqXP_015574998.10.0transcription factor TCP2
RefseqXP_015574999.10.0transcription factor TCP2
RefseqXP_015575000.10.0transcription factor TCP2
TrEMBLB9S0X30.0B9S0X3_RICCO; Uncharacterized protein
STRINGXP_002519642.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40193156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.24e-44TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2