PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

29693.m002046

Common Name

LOC8264148, RCOM_0633820

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

bHLH

Protein Properties

Length: 239aa MW: 26615.7 Da PI: 7.0097

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
29693.m002046	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	13.8	0.0001	189	225	13	54
HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 R+++++ Lr ++P + ++ +++L +Av+Y+ksL 29693.m002046 189 RQKMKKMVKALRGIVPGgD------QMNTVTVLDEAVRYLKSL 225 799***********955......8*************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.614	176	225	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.3E-5	183	231	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.8E-8	186	232	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	8.78E-7	186	230	No hit	No description
SuperFamily	SSF47459	3.01E-8	189	233	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 239 aa Download sequence Send to blast
MQSDQHFRRK KAVPHFANQR GNNYMHVPVA SSFPAAPPTA AKHLMPVHGI EFQPSEVCPK 60 NFIIFDQTDH RSQIMFHPTV AHRFNGPGLN MHASYFQENY EREAVDDTGR EMSSLKEDSD 120 DIDALLSLEE EEQDECDEEE VSTARTYGNY GSSSPDSCST YGSKPRKTGS SSVQKSPGSG 180 SSCSTERKRQ KMKKMVKALR GIVPGGDQMN TVTVLDEAVR YLKSLKVEVQ KIGVGNLKN

Cis-element ? help Back to Top
Source	Link
PlantRegMap	29693.m002046

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015575001.1	0.0	transcription factor bHLH144
Refseq	XP_015575002.1	0.0	transcription factor bHLH144
Swissprot	Q9ASX9	9e-52	BH144_ARATH; Transcription factor bHLH144
TrEMBL	B9S150	1e-180	B9S150_RICCO; Uncharacterized protein
STRING	XP_002519719.1	1e-180	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF11411	11	13

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29950.2	1e-45	bHLH family protein

Link Out ? help Back to Top
Phytozome	29693.m002046
Entrez Gene	8264148

Publications ? help Back to Top
Katayama H, et al. A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem. Curr. Biol., 2015. 25(23): p. 3144-50 [PMID:26616019] Cai Q, et al. The SAC51 Family Plays a Central Role in Thermospermine Responses in Arabidopsis. Plant Cell Physiol., 2016. 57(8): p. 1583-92 [PMID:27388339] Yamamoto M,Takahashi T Thermospermine enhances translation of SAC51 and SACL1 in Arabidopsis. Plant Signal Behav, 2017. 12(1): p. e1276685 [PMID:28045577]