PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

29701.m000580

Common Name

RCOM_0643050

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

G2-like

Protein Properties

Length: 164aa MW: 18734.8 Da PI: 6.8026

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
29701.m000580	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.1	7.2e-32	11	65	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt+eLH+rF +av+qLGG+++AtPk il++m+++gLt++hvkSHLQkYR+ 29701.m000580 11 KERLRWTQELHDRFERAVNQLGGPDRATPKGILKAMSIPGLTIYHVKSHLQKYRI 65 68****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.181	8	68	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	6.0E-30	9	66	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.43E-18	10	65	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.2E-24	11	66	IPR006447	Myb domain, plants
Pfam	PF00249	2.1E-9	13	64	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 164 aa Download sequence Send to blast
MGSSRTDGSG KERLRWTQEL HDRFERAVNQ LGGPDRATPK GILKAMSIPG LTIYHVKSHL 60 QKYRISKFIP ESNNKGNEES ESNSNAKELD SNSEGDRIEM QYEDDFQALK RLRTENDVLP 120 SRYKIEEINP GPYNNQNMGL QDEAKFKFSW TAMSCSSPLV PSFF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-24	10	68	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-24	10	68	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-24	10	68	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-24	10	68	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-24	10	68	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-24	10	68	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-24	10	68	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-24	10	68	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	29701.m000580

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015580205.1	1e-111	myb family transcription factor PHL5
Swissprot	Q9SJW0	1e-30	PHL7_ARATH; Myb family transcription factor PHL7
TrEMBL	B9SQ15	1e-119	B9SQ15_RICCO; Uncharacterized protein
STRING	XP_002528084.1	1e-120	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10659	25	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	2e-29	G2-like family protein

Link Out ? help Back to Top
Phytozome	29701.m000580