PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

29705.m000597

Common Name

RCOM_0651000

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

HB-other

Protein Properties

Length: 162aa MW: 18693 Da PI: 7.4178

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
29705.m000597	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	24.7	3.9e-08	18	39	35	56
HHCTS-HHHHHHHHHHHHHHHH CS Homeobox 35 kklgLterqVkvWFqNrRakek 56 +k +Lt++qV +W+qN+Ra++k 29705.m000597 18 NKKRLTQDQVAIWYQNKRARWK 39 56689****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00046	1.8E-5	19	39	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.36E-6	20	50	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.1E-7	21	48	IPR009057	Homeodomain-like
PROSITE profile	PS50071	9.037	22	41	IPR001356	Homeobox domain
CDD	cd00086	9.23E-4	22	42	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 162 aa Download sequence Send to blast
MDFFHTQTQQ IHTPKHSNKK RLTQDQVAIW YQNKRARWKT QSLELEYNTL QVKLENALID 60 KKRLEKEVMQ LREELRKAQE MVFAFNQRVI IPHHQQQQHH HHHPLPLPPH SLNINNVSCN 120 SSCDEGGSTS LHEDVNGEVL QLDELYACLL GSSGGAAGST WG

Cis-element ? help Back to Top
Source	Link
PlantRegMap	29705.m000597

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015577335.1	1e-113	LOW QUALITY PROTEIN: homeobox-leucine zipper protein ATHB-52-like
TrEMBL	B9SBB4	1e-118	B9SBB4_RICCO; Uncharacterized protein
STRING	XP_002523283.1	1e-119	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF11011	22	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53980.1	2e-20	homeobox protein 52

Link Out ? help Back to Top
Phytozome	29705.m000597