PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29706.m001286
Common NameRCOM_0652810
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family AP2
Protein Properties Length: 613aa    MW: 68405.5 Da    PI: 6.4816
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29706.m001286genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.46.5e-12286342155
            AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                    s+y+GV++++++gr++A+++d  + ++  ++ k  + g ++ +e+Aa+a++ a++k++g
  29706.m001286 286 SQYRGVTRHRWTGRYEAHLWDnSC-RKegQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 342
                    78*******************433.44555535555.779999**************98 PP
2AP2483.2e-15385436155
            AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                    s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  29706.m001286 385 SVYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 436
                    78****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.4E-9286342IPR001471AP2/ERF domain
CDDcd000183.94E-19286352No hitNo description
SuperFamilySSF541719.81E-15286352IPR016177DNA-binding domain
SMARTSM003804.8E-23287356IPR001471AP2/ERF domain
PROSITE profilePS5103217.332287350IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-12287351IPR001471AP2/ERF domain
PRINTSPR003671.5E-6288299IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-18385446IPR016177DNA-binding domain
CDDcd000183.29E-25385446No hitNo description
PfamPF008476.4E-10385436IPR001471AP2/ERF domain
PROSITE profilePS5103219.006386444IPR001471AP2/ERF domain
SMARTSM003803.6E-34386450IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-18386444IPR001471AP2/ERF domain
PRINTSPR003671.5E-6426446IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0055114Biological Processoxidation-reduction process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0032440Molecular Function2-alkenal reductase [NAD(P)] activity
Sequence ? help Back to Top
Protein Sequence    Length: 613 aa     Download sequence    Send to blast
MSNWLGFSVS PHLRIDDGFG NREEEEEEHG DGFTSSHHQH HHHHDISVMP LRSDGSLCVV  60
DPFRRSSNGA AQDWRYESTV DATSTSEEGP KLEDFLGCYS NSPSDDKIYC QEDQTQTQNH  120
ISRINVNVAP TFNTTNNGDL DSSGEHLASH QPSLIQSYHH YHEKSQTLIP NDHRHHHQNP  180
HHCDPNPGHS HNNGGVYHVP FESASSVSGF KSWLRQTQFS SDKSSNEVNN YNFQPLSLTM  240
SPSSQNGMVA VSPLQVVDNR KRPVAKSLAR EPVPRKSLDT FGQRTSQYRG VTRHRWTGRY  300
EAHLWDNSCR KEGQTRKGRQ GGYDKEEKAA RAYDLAALKY WGPTTHINFP LSTYEKELEE  360
MKHMTRQEFV ANLRRKSSGF SRGASVYRGV TRHHQHGRWQ ARIGRVAGNK DLYLGTFSTQ  420
EEAAEAYDIA AIKFRGTSAV TNFDISRYDV KRICSSTTLI ASDLAKRSSK DLAPMPLEEE  480
NSCASSTSPQ PLLANIVSGE ASDELAEMMW NANTDEHQQQ QSANNTSNDM PLVGSCSRIN  540
SNNPGSPKCS VGLASEFCTS GGGGGDYNQG FSLQDSKYED ADDDDNNNIS GSDNRIGSLG  600
LVHQVPMFAL WNE
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap29706.m001286
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015576091.10.0AP2-like ethylene-responsive transcription factor AIL1
SwissprotQ1PFE11e-138AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1
TrEMBLB9S5R30.0B9S5R3_RICCO; DNA binding protein, putative
STRINGXP_002521332.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF102743137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.11e-130AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]