PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

29706.m001290

Common Name

RCOM_0653040

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

MYB_related

Protein Properties

Length: 214aa MW: 23948.9 Da PI: 4.6827

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
29706.m001290	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.4	1.4e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+ Ed++l d+++++G g W++ +++ g++R++k+c++rw++yl 29706.m001290 14 RGAWTAMEDKILTDYIQMHGQGKWRKLPKRAGLKRCGKSCRLRWLNYL 61 89********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.8E-23	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	21.432	9	65	IPR017930	Myb domain
SMART	SM00717	1.1E-13	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	1.3E-15	14	61	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	6.29E-21	15	88	IPR009057	Homeodomain-like
CDD	cd00167	2.57E-11	16	61	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.5E-7	65	88	IPR009057	Homeodomain-like
SMART	SM00717	49	66	197	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 214 aa Download sequence Send to blast
MGRSPCCAKE GLNRGAWTAM EDKILTDYIQ MHGQGKWRKL PKRAGLKRCG KSCRLRWLNY 60 LRPDIKRGNI TNDEEELIIR LHNLLGNRKP RKCDDVKAVA APPSVATSVS GSDDILVPES 120 SPPLEFTLGE DNNPSDILLD FEMGEQLLFD LLNADYSELN SFDHGEATDS NLCDIQGHLS 180 SDSDKSILVS NDHVMHDSGF PSIDSLMESE LDWF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	1e-12	12	88	25	100	MYB TRANSFORMING PROTEIN
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	29706.m001290

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015576108.1	8e-85	transcription repressor MYB6 isoform X2
TrEMBL	B9S5R6	1e-156	B9S5R6_RICCO; R2r3-myb transcription factor, putative
STRING	XP_002521335.1	1e-157	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF31	34	817

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G49330.1	2e-44	myb domain protein 111

Link Out ? help Back to Top
Phytozome	29706.m001290