PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29706.m001328
Common NameRCOM_0654820
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family MYB_related
Protein Properties Length: 349aa    MW: 38907.1 Da    PI: 8.7702
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29706.m001328genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.51.5e-1383134147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47 
                      +++WT+eE+e l+++v+++G+g Wk I +        + R+  ++k++w+++
    29706.m001328  83 KQKWTAEEEEALLNGVAKHGPGKWKNILKDPDfapflTQRSNIDLKDKWRNL 134
                      79***********************************99***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.19378139IPR017930Myb domain
SuperFamilySSF466893.8E-1680136IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.4E-1680135IPR009057Homeodomain-like
SMARTSM007171.3E-782137IPR001005SANT/Myb domain
PfamPF002498.4E-1083134IPR001005SANT/Myb domain
CDDcd116605.48E-2084134No hitNo description
SMARTSM005268.3E-17186251IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467851.36E-15186267IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150424.248188256IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.103.7E-14188262IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005381.0E-10190251IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MPSSPPTCLC QMQCKCCHFS GLQPYWVWLR QSQKREKAGA RKEKKEEENT GLCKTKTRAQ  60
RRYEFEEESF DEEGEGAKMG NQKQKWTAEE EEALLNGVAK HGPGKWKNIL KDPDFAPFLT  120
QRSNIDLKDK WRNLSVSNAA QGSNPKTRGA PKPKILPLPP PSNANAQITA TADALMDDCL  180
NNAADGKNAP RYNAMIFEAL STLKDINGCD ISAIVHFIEQ RHEVPQNFRR LLGSRLRRLV  240
SQGKLEKVQN GYRISKDAAL GAKTPTPRQK DVRPRQSQNS GLTSGETVEE AAIAAAYKVA  300
EAENKSFLAA EAVKEAERVS KMAEDTDSML QLVKDIYEQC SRGEIVLLA
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00652PBMTransfer from LOC_Os01g51154Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap29706.m001328
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015576140.10.0telomere repeat-binding factor 4
SwissprotF4I7L14e-80TRB4_ARATH; Telomere repeat-binding factor 4
TrEMBLB9S5V40.0B9S5V4_RICCO; Transcription factor, putative
STRINGXP_002521373.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32282958
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.14e-72MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]