PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29706.m001341
Common NameRCOM_0655440
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family MYB_related
Protein Properties Length: 323aa    MW: 35394.8 Da    PI: 4.9817
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29706.m001341genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.51.5e-0831522345
                     -HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwq 45
                     +W+ Ia++++ gRt++++k++w+
    29706.m001341 31 RWAQIAKHLP-GRTDNEVKNFWN 52
                     5*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-112760IPR009057Homeodomain-like
SuperFamilySSF466895.54E-82962IPR009057Homeodomain-like
CDDcd001671.00E-63052No hitNo description
PROSITE profilePS500906.5283155IPR017877Myb-like domain
PfamPF002491.1E-63153IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MAMVAGVLFL NMLILVALAL CWIWINEFLD RWAQIAKHLP GRTDNEVKNF WNSSIKKKLI  60
SHDHVPALAT FADIHNPNGS DQEAAFFSLG ANPNLILSTA AHHQQDQLYH LPSPTSMLQS  120
FGQQGDFKLN QLPNNTYNLD LPHLAPHQII PPQPNSTSSP FDPMWALPYL PQHVDPNGNQ  180
EDQILSTGIV GPLHYIGEKF NNDQSIGLMG YDQNQVMVPM MPKLCEIIEG SSTSVCCIPS  240
SSSSQEVVVD PLARLPCFPS SSGCYPHDPH VTANQMEYID AIMSSLPSSS SSSSLSAFSN  300
GQFGANPNNN NNNLPSTCSW DNA
Cis-element ? help Back to Top
SourceLink
PlantRegMap29706.m001341
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015576089.10.0transcription factor MYB26
TrEMBLB9S5W60.0B9S5W6_RICCO; R2r3-myb transcription factor, putative
STRINGXP_002521385.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF30143168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13890.28e-16myb domain protein 26