PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

29709.m001171

Common Name

RCOM_0658180

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

WRKY

Protein Properties

Length: 185aa MW: 20927.9 Da PI: 5.293

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
29709.m001171	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	35.5	2e-11	131	156	1	26
---SS-EEEEEEE--TT-SS-EEEEE CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYr 26 ldDgy+WrKYGqK+vk+s +p Y + 29709.m001171 131 LDDGYKWRKYGQKVVKNSLHPSVYCK 156 59*******************99977 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	3.8E-13	116	157	IPR003657	WRKY domain
SuperFamily	SSF118290	1.44E-10	123	156	IPR003657	WRKY domain
PROSITE profile	PS50811	12.805	126	163	IPR003657	WRKY domain
SMART	SM00774	2.1E-4	131	181	IPR003657	WRKY domain
Pfam	PF03106	9.3E-8	132	157	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 185 aa Download sequence Send to blast
MEGGEREVPN YELQVSFSTP QAIHEMGFVQ FEENQVLSFL APSHSQQSSQ ISQPLNTTTT 60 TTQIGFSTHN DQVGNLDPKA TNEDTCTASA NDGNNSWWRS SSSSEKNKVK VRRRLREPRF 120 CFQTRSDVDV LDDGYKWRKY GQKVVKNSLH PSVYCKVNAE LSEIPSPEHE VSFLFENSEN 180 SNAFA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	109	115	KVRRRLR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	29709.m001171

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015579263.1	7e-89	probable WRKY transcription factor 12
Swissprot	Q93WY4	1e-41	WRK12_ARATH; Probable WRKY transcription factor 12
TrEMBL	B9SKK6	1e-136	B9SKK6_RICCO; Transcription factor, putative
STRING	XP_002526469.1	1e-137	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7294	32	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44745.1	5e-27	WRKY family protein

Link Out ? help Back to Top
Phytozome	29709.m001171

Publications ? help Back to Top
Yu Y, et al. MlWRKY12, a novel Miscanthus transcription factor, participates in pith secondary cell wall formation and promotes flowering. Plant Sci., 2013. 212: p. 1-9 [PMID:24094048] Yang L, et al. PtrWRKY19, a novel WRKY transcription factor, contributes to the regulation of pith secondary wall formation in Populus trichocarpa. Sci Rep, 2016. 6: p. 18643 [PMID:26819184] Li W,Wang H,Yu D Arabidopsis WRKY Transcription Factors WRKY12 and WRKY13 Oppositely Regulate Flowering under Short-Day Conditions. Mol Plant, 2016. 9(11): p. 1492-1503 [PMID:27592586] Han Y, et al. WRKY12 represses GSH1 expression to negatively regulate cadmium tolerance in Arabidopsis. Plant Mol. Biol., 2019. 99(1-2): p. 149-159 [PMID:30617455]