PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29711.m000322
Common NameRCOM_0660720
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family bHLH
Protein Properties Length: 316aa    MW: 35140.3 Da    PI: 6.4104
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29711.m000322genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.56.4e-103684254
                   HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
            HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                   +  +  rE+ RRdr+N+ f eL + l ++    ++K++Ka+iL+ +++ +k+L
  29711.m000322 36 KSEKADREKLRRDRLNEHFIELGDALDPD----KPKNDKATILTDTIQLLKDL 84
                   667889********************998....8****************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.9513484IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.57E-83588No hitNo description
Gene3DG3DSA:4.10.280.104.0E-1235106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.1E-83584IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.28E-1336103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.9E-84090IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MHELMVTLVG FCNVINFCFD SQGLESEVKD SVAVRKSEKA DREKLRRDRL NEHFIELGDA  60
LDPDKPKNDK ATILTDTIQL LKDLTSQVNK LKVEYATLTE ESRELTQEKN DLREEKASLK  120
SEIENLNIQY QQRARATYPW VAMDHSVVMA PTSYPFLMPM PIPPRPISLH PTMQPYPFFG  180
NQNPTVIHNP YSIFVPYMTP SALVEQQSTQ HATSSALPAS GSHVSGKEDS KNKSSRESKT  240
GKSWDSNDVT TELELKTPGS TTDPDLSSRQ RKSKKSLGKE NSITDGSSTS RCSSRSVQDS  300
SSSSIAGSPK ADDISP
Cis-element ? help Back to Top
SourceLink
PlantRegMap29711.m000322
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002529247.20.0transcription factor bHLH121
SwissprotQ9LT232e-90BH121_ARATH; Transcription factor bHLH121
TrEMBLB9STC80.0B9STC8_RICCO; DNA binding protein, putative
STRINGXP_002529247.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22823376
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.23e-85bHLH family protein
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]