PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

29726.m004023

Common Name

RCOM_0680560

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

NF-YB

Protein Properties

Length: 158aa MW: 18003.1 Da PI: 7.1938

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
29726.m004023	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	169.4	4.3e-53	40	135	2	97
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 + qdr+lPianv+rimk++lP nakisk+aket+qecvsefisfvtseas+kc++e+rkt+ngdd++wa++ lGf+dy+ pl+ yl++yreleg++ 29726.m004023 40 KGQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTSEASEKCRKERRKTVNGDDVCWAMGALGFDDYAGPLRRYLQRYRELEGDR 135 679*******************************************************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.9E-52	35	152	IPR009072	Histone-fold
SuperFamily	SSF47113	8.23E-40	42	150	IPR009072	Histone-fold
Pfam	PF00808	1.3E-27	45	109	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	2.9E-17	73	91	No hit	No description
PROSITE pattern	PS00685	0	76	92	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	2.9E-17	92	110	No hit	No description
PRINTS	PR00615	2.9E-17	111	129	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 158 aa Download sequence Send to blast
MDFDLHQTRL GRKGKTNFFL QQEMDDNVGA SGSNEEGGTK GQDRLLPIAN VGRIMKQILP 60 PNAKISKEAK ETMQECVSEF ISFVTSEASE KCRKERRKTV NGDDVCWAMG ALGFDDYAGP 120 LRRYLQRYRE LEGDRANQDK ARNSNTEERE EPSSYRSK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	2e-43	40	130	2	92	Transcription factor HapC (Eurofung)
4g92_B	2e-43	40	130	2	92	Transcription factor HapC (Eurofung)
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Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	29726.m004023

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002516901.2	1e-96	nuclear transcription factor Y subunit B-5
Swissprot	O82248	3e-55	NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBL	B9RT32	1e-114	B9RT32_RICCO; Ccaat-binding transcription factor subunit A, putative
STRING	XP_002516901.1	1e-115	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF805	32	131

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47810.1	2e-48	nuclear factor Y, subunit B5

Link Out ? help Back to Top
Phytozome	29726.m004023

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]