PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29726.m004094
Common NameLOC8278775, RCOM_0682370
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family ERF
Protein Properties Length: 247aa    MW: 27627.4 Da    PI: 8.0666
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29726.m004094genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.31.3e-2093141355
            AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                    y+G+r+++ +g+W+AeIrdp     +  r++lg+f taeeAa+a+++a+k+++g
  29726.m004094  93 YRGIRQRP-WGKWAAEIRDPQ----KgVRVWLGTFSTAEEAARAYDEAAKRIRG 141
                    9*******.**********94....35************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541719.15E-2392150IPR016177DNA-binding domain
PROSITE profilePS5103224.19792149IPR001471AP2/ERF domain
SMARTSM003802.7E-3992155IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.9E-3392149IPR001471AP2/ERF domain
CDDcd000181.24E-3392148No hitNo description
PfamPF008472.6E-1493141IPR001471AP2/ERF domain
PRINTSPR003676.4E-1293104IPR001471AP2/ERF domain
PRINTSPR003676.4E-12115131IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008219Biological Processcell death
GO:0009723Biological Processresponse to ethylene
GO:0009735Biological Processresponse to cytokinin
GO:0009753Biological Processresponse to jasmonic acid
GO:0010286Biological Processheat acclimation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051707Biological Processresponse to other organism
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MCGGSILADA DDVKPRRRLF SQDLWAELDP FSNFFGLNYL TDSANKNHLS THFDFKLTPQ  60
KPKLQLNSNQ VAVEKAIEKE ENKKAPRIRK NIYRGIRQRP WGKWAAEIRD PQKGVRVWLG  120
TFSTAEEAAR AYDEAAKRIR GDKAKLNFPT PTPLAAPAPA PAAPTEVEAP VLPPPSKKSC  180
TMSSPETKPV EYGPKEEITS LETFLGLEPE QMVAQLNGSG CEGGDFVELW MLDDLVSHHQ  240
NKRPFPF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-2293149663ATERF1
3gcc_A1e-2293149663ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00109PBMTransfer from AT3G16770Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap29726.m004094
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002516971.10.0ethylene-responsive transcription factor RAP2-3 isoform X1
TrEMBLB9RTA20.0B9RTA2_RICCO; Uncharacterized protein
STRINGXP_002516971.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48923353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.11e-36ethylene-responsive element binding protein