PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29728.m000800
Common NameLOC8262701, RCOM_0685420
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family TCP
Protein Properties Length: 444aa    MW: 47128.9 Da    PI: 7.4428
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29728.m000800genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP131.39.3e-411052142105
            TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg........ 88 
                    ++ k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai+++tgt++++a+++  ++s +ss+ + s++        
  29728.m000800 105 PTTKKPSKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFStLNVSLRSSGTTISAPpsksapis 200
                    5789*****************************************************************999877777777774444455443333 PP

            TCP  89 ..........kaaksaakskksqksaa 105
                              +             +++
  29728.m000800 201 fhsglafydpN-------------NSN 214
                    33333333220.............222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136928.705111165IPR017887Transcription factor TCP subgroup
PfamPF036342.1E-38111223IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MVLMDSQSNN QQNSSSNKDH HHHHHPHHHH HGQKQEPSAA SLQLVSLENQ SSQLQQQQQQ  60
QHGSIAATTT ASATAQGPFM GSISNQIGVH PSTSNSNNSA LTIKPTTKKP SKDRHTKVDG  120
RGRRIRMPAL CAARVFQLTR ELGHKSDGET IEWLLQQAEP AIIAATGTGT IPANFSTLNV  180
SLRSSGTTIS APPSKSAPIS FHSGLAFYDP NNSNTNNNGS SENRRLLGSN TAMLGFHHQL  240
YPSNLASEEN YMRKTYTEDL LKGTSTPTTT QQEATEPIDT SSNKPAAART GAVVQEHQEL  300
GSIRPSNILA TPAAMWAVAP AAAANGGNAF WMLPVGGGTA TTAAVPEPQM WTFPAAGVTS  360
MQRVNFSGGG RLSPVQLGSM IVQQQVGGGQ QLGLGVAESN MGLLGSVNAY NSRVGLGMNL  420
EQHNQESHQQ GSDSGDDQNP TDSQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00228DAPTransfer from AT1G72010Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap29728.m000800
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002526804.10.0transcription factor TCP23
SwissprotQ9C7G47e-76TCP22_ARATH; Transcription factor TCP22
TrEMBLB9SLD50.0B9SLD5_RICCO; Transcription factor, putative
STRINGXP_002526804.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF60773050
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72010.13e-56TCP family protein
Publications ? help Back to Top
  1. Wu JF, et al.
    LWD-TCP complex activates the morning gene CCA1 in Arabidopsis.
    Nat Commun, 2016. 7: p. 13181
    [PMID:27734958]
  2. Dong H, et al.
    Ubiquitylation activates a peptidase that promotes cleavage and destabilization of its activating E3 ligases and diverse growth regulatory proteins to limit cell proliferation in Arabidopsis.
    Genes Dev., 2017. 31(2): p. 197-208
    [PMID:28167503]