PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29729.m002292
Common NameLOC8272098, RCOM_0687530
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family ERF
Protein Properties Length: 386aa    MW: 42745.9 Da    PI: 4.5765
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29729.m002292genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2574.8e-1880130155
            AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                    + y+GVr++  +g+WvAeIr+p   + r  r +lg+f ta+eAa a+++a+k+++g
  29729.m002292  80 CNYRGVRQRT-WGKWVAEIREP---N-RgPRLWLGTFPTAYEAAVAYDEAAKAMYG 130
                    56*****999.**********8...2.35************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.43E-3380140No hitNo description
PfamPF008472.0E-1280130IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.6E-3181139IPR001471AP2/ERF domain
SMARTSM003802.6E-3981144IPR001471AP2/ERF domain
PROSITE profilePS5103222.03681138IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-2181138IPR016177DNA-binding domain
PRINTSPR003673.1E-98293IPR001471AP2/ERF domain
PRINTSPR003673.1E-9104120IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0010286Biological Processheat acclimation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MGTFGHNSNA SSMQLDSTRK RKRREGTSSV AETLKKWKEY NEYLDSCAKG EDNKPVRKTP  60
AKGSRKGCMK GKGGPENSEC NYRGVRQRTW GKWVAEIREP NRGPRLWLGT FPTAYEAAVA  120
YDEAAKAMYG SSARLNFPEL SSSSKDDTHS VATTSGGYPS VAAPAGSDST TTSNHSEVCV  180
LDDTKEHVVK LGDGEGESKI TPHSDPLTQT ASATTTYKQE LKSELENVKE SDRGEVPVKE  240
VPIQNNACDL KQKGADDLQP VPKDFSLNVE EWNLLNENEG QGQDIWQNFT MDELFNVDEL  300
LGVIDNYPLD MQFDGGQLLC TDNNQLQHDQ PLDLSFQLES PDTRFIGGYQ PSEQVPSGGD  360
YSFDFVKPGR QEDNNNVPLN DQGFFM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-1881138260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11823RKRKRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00302DAPTransfer from AT2G40340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap29729.m002292
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002520794.10.0dehydration-responsive element-binding protein 2C
TrEMBLB9S4750.0B9S475_RICCO; Dehydration-responsive element-binding protein 2C, putative
STRINGXP_002520794.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF117534106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40340.12e-57ERF family protein