PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

29729.m002335

Common Name

LOC8259521, RCOM_0689060

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

LBD

Protein Properties

Length: 223aa MW: 24321.8 Da PI: 8.9609

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
29729.m002335	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	135.3	2.3e-42	42	141	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 +CaaCk+lrr+Ca++C+++pyf ++p+kfa vhk+FGasnv+k+l ++pe++r da++slvyeA++r+rdPvyG++g i++lqqq+++l+ael++ 29729.m002335 42 PCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLMEVPESQRADAANSLVYEANVRLRDPVYGCMGAISALQQQIQTLQAELNA 137 7*********************************************************************************************** PP DUF260 97 lkee 100 +++e 29729.m002335 138 VRAE 141 9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.935	41	142	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.5E-42	42	139	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 223 aa Download sequence Send to blast
MSRERERFDE IGKKIKREID ASSQMGRRHM LGPPGTLNTI TPCAACKLLR RRCAQECPFS 60 PYFSPHEPQK FASVHKVFGA SNVSKMLMEV PESQRADAAN SLVYEANVRL RDPVYGCMGA 120 ISALQQQIQT LQAELNAVRA EILKYKYREA NILPSTHVAL LSSGAVSVAA TSQSLTPPPP 180 TPPPPPPPPP LPPTSSSTSL YTHQPTTVAD YSSISSENVS FFG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-46	34	155	3	124	LOB family transfactor Ramosa2.1
5ly0_B	3e-46	34	155	3	124	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	29729.m002335

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002520837.1	1e-163	LOB domain-containing protein 15
Swissprot	Q8L5T5	1e-87	LBD15_ARATH; LOB domain-containing protein 15
TrEMBL	B9S4B8	1e-162	B9S4B8_RICCO; LOB domain-containing protein, putative
STRING	XP_002520837.1	1e-163	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2298	34	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	1e-87	LOB domain-containing protein 15

Link Out ? help Back to Top
Phytozome	29729.m002335
Entrez Gene	8259521

Publications ? help Back to Top
Ohashi-Ito K,Iwamoto K,Fukuda H LOB DOMAIN-CONTAINING PROTEIN 15 Positively Regulates Expression of VND7, a Master Regulator of Tracheary Elements. Plant Cell Physiol., 2018. 59(5): p. 989-996 [PMID:29444288]