PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29733.m000763
Common NameRCOM_0694470
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family C3H
Protein Properties Length: 261aa    MW: 29298 Da    PI: 4.7658
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29733.m000763genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.61.8e-12167192126
                    --S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                    y   +C+++ +tG+C yGd+CkF+H+
  29733.m000763 167 YQPDICKDYKETGYCGYGDSCKFMHD 192
                    67789********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.44E-9165197IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-7166193IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.878166194IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-10167192IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-12167197IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.101.3E-4231261IPR013083Zinc finger, RING/FYVE/PHD-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MADSGQSEQP EPDEEDDNSK TESSLLHNQK KAPKPDNKLY FSTGPSKNSL SAAESVVESD  60
RPVFQFESSK EIQVQHDSRA TATLETETEF SKDARAIRER ALNQAEEALK GKTPSSGDAK  120
LYKGIHGYTD HKAGFRREQT ISSEKAGGSH GPLRASAHIR VSARFDYQPD ICKDYKETGY  180
CGYGDSCKFM HDRGDYKSGW QLEKEWDEAE KIRKRNLALG ELEGGTGENE EEDDDDEDEL  240
PFACFICRQP FVDPVMTKCK H
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M4e-4877261113279RING finger protein 113A
5z58_M4e-4877261113279RING finger protein 113A
6ff4_t4e-4877261113279RING finger protein 113A
6ff7_t4e-4877261113279RING finger protein 113A
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap29733.m000763
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002522169.11e-169zinc finger CCCH domain-containing protein 1
SwissprotQ8GX841e-129C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBLB9S8640.0B9S864_RICCO; RING finger protein 113A, putative
STRINGXP_002522183.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70823348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-125C3H family protein