PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29738.m001041
Common NameRCOM_0705020
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family TCP
Protein Properties Length: 449aa    MW: 50158.6 Da    PI: 9.0231
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29738.m001041genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP149.42.4e-461242812133
            TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...............ssssaseceaesssssa 82 
                     gkkdrhski+T++g+RdRR+Rls+++a++fFdLqd+LGfdk+skti+WL++++k+aikelt++               s            +ss+
  29738.m001041 124 SGKKDRHSKIYTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASKTIDWLFTKSKAAIKELTDSypkvkrssdsdgssrS------------VSST 207
                    68**************************************************************9876654433222210............2222 PP

            TCP  83 snsssg..........................kaaksaa.kskksqksaasalnlakesrakarararertrekmrik 133
                    s+s  +                          ++++ ++ +++k++k+    + la+esr karararert+ek + +
  29738.m001041 208 SES--EvmsgtklttedngdkrgmgtegdsfvRQQRCKEsNNNKPNKPVF--NLLARESRDKARARARERTKEKLKHR 281
                    211..122444455556677888999999877555555524444444444..66677*****************9877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.0E-45125279IPR005333Transcription factor, TCP
PROSITE profilePS5136937.833126184IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137011.806260277IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MYSSSNSFTN PLPYTNQTTV STSFFDTYQN PSSIQDYPSS SPPFLNFPVS TFLDDGDLLL  60
SDFVTQQQQQ ILGFNDISLA AETNSQENHM NLAASKKATT RTNKKIKRSS STASSQQPIS  120
RKRSGKKDRH SKIYTAQGPR DRRMRLSLQI ARKFFDLQDM LGFDKASKTI DWLFTKSKAA  180
IKELTDSYPK VKRSSDSDGS SRSVSSTSES EVMSGTKLTT EDNGDKRGMG TEGDSFVRQQ  240
RCKESNNNKP NKPVFNLLAR ESRDKARARA RERTKEKLKH RCLDKSKHCC SQSNPDILEL  300
LLPSGTLENG EKQEMKSAVK TVSDQEGEKE KAEDQEPGTI LGLTNSTVSF SFFDISQDAV  360
IPSGPDFEDH EFSGFPGNWD IISNGSNNNR YYSMPNMKLS ATGNAHVQNP NAIFMATPNS  420
QEQNLTSVFM ATSDTQNPNS GFHELFKFK
Cis-element ? help Back to Top
SourceLink
PlantRegMap29738.m001041
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002524400.20.0LOW QUALITY PROTEIN: transcription factor TCP12
TrEMBLB9SEI10.0B9SEI1_RICCO; Uncharacterized protein
STRINGXP_002524400.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17383294
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.13e-26TCP domain protein 12