PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

29738.m001043

Common Name

LOC8269511, RCOM_0705340

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

bHLH

Protein Properties

Length: 367aa MW: 40851.8 Da PI: 6.6024

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
29738.m001043	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	44.7	2.3e-14	173	219	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN+ +++Lr+llP+ +K +Ka+ L ++++++k+L 29738.m001043 173 KSHSEAERRRRERINNHLAKLRSLLPST-----TKTDKASLLAEVIQHVKEL 219 79***********************9.....8**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	16.907	170	219	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	9.1E-12	173	219	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.31E-14	174	226	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.0E-14	174	228	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.3E-13	176	225	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.28E-5	183	222	No hit	No description
Gene3D	G3DSA:3.30.70.260	4.5E-4	255	306	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 367 aa Download sequence Send to blast
MCGLKEEDQG ECSQTIHNLQ GYQEQLLLQQ MQHQHQQQTS DMYGGARGGS SGLIFPEVSP 60 ILPWPLPPVH SFNPAMTQFP SNQVHHHHHH RDHHDPFLIP PPVPSSYGNL FNRRAPALQF 120 AYDGSSSHDH LRIITDTLGP VVQPGSAPFG LQAELGKMTA QEIMDAKALA ASKSHSEAER 180 RRRERINNHL AKLRSLLPST TKTDKASLLA EVIQHVKELK RQTSLIAETS PVPTEIDELT 240 VDASDEDGKF IIKASLCCED RSDLLPDLIK TLKALRLRTL KAEITTLGGR VKNVLFITGE 300 EDSSSNSNEE DQQQQPQYSI SSIQEALKAV MEKSGGDESS SGSVKRQRTN INVLDQQQQQ 360 QQQHRSL

Sequence ? help Back to Top

Protein Sequence Length: 367 aa Download sequence Send to blast

MCGLKEEDQG ECSQTIHNLQ GYQEQLLLQQ MQHQHQQQTS DMYGGARGGS SGLIFPEVSP  60
ILPWPLPPVH SFNPAMTQFP SNQVHHHHHH RDHHDPFLIP PPVPSSYGNL FNRRAPALQF  120
AYDGSSSHDH LRIITDTLGP VVQPGSAPFG LQAELGKMTA QEIMDAKALA ASKSHSEAER  180
RRRERINNHL AKLRSLLPST TKTDKASLLA EVIQHVKELK RQTSLIAETS PVPTEIDELT  240
VDASDEDGKF IIKASLCCED RSDLLPDLIK TLKALRLRTL KAEITTLGGR VKNVLFITGE  300
EDSSSNSNEE DQQQQPQYSI SSIQEALKAV MEKSGGDESS SGSVKRQRTN INVLDQQQQQ  360
QQQHRSL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	178	183	ERRRRE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	29738.m001043

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002524402.1	0.0	transcription factor bHLH30
Swissprot	Q9S7Y1	1e-112	BH030_ARATH; Transcription factor bHLH30
TrEMBL	B9SEI3	0.0	B9SEI3_RICCO; DNA binding protein, putative
STRING	XP_002524402.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4589	34	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68810.1	1e-80	bHLH family protein

Link Out ? help Back to Top
Phytozome	29738.m001043
Entrez Gene	8269511

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ohashi-Ito K, et al. A bHLH complex activates vascular cell division via cytokinin action in root apical meristem. Curr. Biol., 2014. 24(17): p. 2053-8 [PMID:25131670] Katayama H, et al. A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem. Curr. Biol., 2015. 25(23): p. 3144-50 [PMID:26616019]