PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29739.m003565
Common NameLOC8281199, RCOM_0705960
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family HSF
Protein Properties Length: 371aa    MW: 41674.2 Da    PI: 4.4886
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29739.m003565genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.94.3e-35361272102
                    HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS
   HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97 
                    Fl+k++e++ed+++++++sws+  nsf+v+d+++f++++LpkyFkhsnf+SF+RQLn+YgF+k++ ++         weF+++ F  g+k+ll++i
  29739.m003565  36 FLTKTFEMVEDPSTDSVVSWSRARNSFIVWDSHKFSTTLLPKYFKHSNFSSFIRQLNTYGFRKIDPDR---------WEFANEGFLGGQKHLLKTI 122
                    9****************************************************************999.........******************* PP

                    XXXXX CS
   HSF_DNA-bind  98 krkks 102
                    kr+++
  29739.m003565 123 KRRRH 127
                    **975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467854.22E-3432125IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.107.5E-3832125IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004158.5E-6032125IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.8E-3136125IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.6E-193659IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.6E-197486IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043407599IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.6E-198799IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009644Biological Processresponse to high light intensity
GO:0010200Biological Processresponse to chitin
GO:0010286Biological Processheat acclimation
GO:0034605Biological Processcellular response to heat
GO:0034620Biological Processcellular response to unfolded protein
GO:0042542Biological Processresponse to hydrogen peroxide
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071456Biological Processcellular response to hypoxia
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MERVVVVKEE TTTSYSSSSL SPQPKEGLHE MGPPPFLTKT FEMVEDPSTD SVVSWSRARN  60
SFIVWDSHKF STTLLPKYFK HSNFSSFIRQ LNTYGFRKID PDRWEFANEG FLGGQKHLLK  120
TIKRRRHVSQ SMQQQSGGAY VELGKFGLDG ELERLKRDRN VLTVEIIRLR QQQQQSREQI  180
AAMEDRLLST EKKQQQITAF LAKALNNPSF IQQFAQRSAQ REELRGVGVG HKRRLAASPS  240
VENLEEEAAS GSVGIGQVVD YTDEGLETMG TEIETFLSAA LDNESSTDVR DSIAGSGQGS  300
SGMDKLGSFN ETAWEDLLND DIIAQNPDEE TIPSEEAELD VEVEDLVANP EDWGEDLQDL  360
VDQMGYLRST P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-253412527129Heat shock factor protein 1
5d5v_B2e-253412527129Heat shock factor protein 1
5d5v_D2e-253412527129Heat shock factor protein 1
5hdg_A2e-25341258110Heat shock factor protein 1
5hdn_A2e-25341258110Heat shock factor protein 1
5hdn_B2e-25341258110Heat shock factor protein 1
5hdn_C2e-25341258110Heat shock factor protein 1
5hdn_D2e-25341258110Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1118124LKTIKRR
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap29739.m003565
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025012596.10.0heat shock factor protein HSF30
SwissprotP411521e-135HSF30_SOLPE; Heat shock factor protein HSF30
TrEMBLB9RQR40.0B9RQR4_RICCO; Heat shock factor protein HSF30, putative
STRINGXP_002516083.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF82253143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.11e-116heat shock transcription factor A2
Publications ? help Back to Top
  1. Scharf KD,Rose S,Thierfelder J,Nover L
    Two cDNAs for tomato heat stress transcription factors.
    Plant Physiol., 1993. 102(4): p. 1355-6
    [PMID:8278556]