PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

29739.m003586

Common Name

LOC8258551, RCOM_0706470

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

WRKY

Protein Properties

Length: 159aa MW: 18034.9 Da PI: 6.358

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
29739.m003586	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	100.3	1.2e-31	98	156	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDg++WrKYG+K+vk+s++pr+YYrC+ +gCpvkk+ver+++d ++v++tYeg Hnh+ 29739.m003586 98 LDDGFKWRKYGKKMVKNSPNPRNYYRCSVEGCPVKKRVERDKDDLRFVITTYEGIHNHP 156 59********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.0E-33	84	157	IPR003657	WRKY domain
SuperFamily	SSF118290	4.71E-28	91	156	IPR003657	WRKY domain
PROSITE profile	PS50811	30.699	93	158	IPR003657	WRKY domain
SMART	SM00774	1.5E-36	98	157	IPR003657	WRKY domain
Pfam	PF03106	5.8E-25	99	156	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009867	Biological Process	jasmonic acid mediated signaling pathway
GO:0050832	Biological Process	defense response to fungus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 159 aa Download sequence Send to blast
MSHYSAGSQE SDYGDPTNFE LSEFLMFDEW IEDANDQSSL LSGSIQNPVY RAHVVGESGG 60 AISPYGEHSN GEGREGSREK KGVKERVAFK TKSEIEILDD GFKWRKYGKK MVKNSPNPRN 120 YYRCSVEGCP VKKRVERDKD DLRFVITTYE GIHNHPSSC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	3e-25	86	155	2	71	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00531	DAP	Transfer from AT5G26170	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	29739.m003586

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT827597	2e-64	KT827597.1 Manihot esculenta WRKY transcription factor 22 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002516104.1	1e-116	probable WRKY transcription factor 50 isoform X2
Swissprot	Q8VWQ5	2e-43	WRK50_ARATH; Probable WRKY transcription factor 50
TrEMBL	B9RQT5	1e-115	B9RQT5_RICCO; WRKY transcription factor, putative
STRING	XP_002516104.1	1e-116	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1120	34	110

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26170.1	8e-44	WRKY DNA-binding protein 50

Link Out ? help Back to Top
Phytozome	29739.m003586
Entrez Gene	8258551

Publications ? help Back to Top
Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro. Plant Methods, 2010. 6: p. 25 [PMID:21108821]