PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29739.m003610
Common NameRCOM_0707120
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family MYB_related
Protein Properties Length: 198aa    MW: 22392.9 Da    PI: 4.5348
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29739.m003610genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding301.2e-091344132
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg 32
                     rg+WT+ Edell ++v+ +G g W +++++ g
    29739.m003610 13 RGSWTANEDELLREYVRNHGEGKWGKVPKETG 44
                     89***************************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.38E-8844IPR009057Homeodomain-like
PROSITE profilePS5129410.304863IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.2E-11842IPR009057Homeodomain-like
PfamPF002498.3E-81344IPR001005SANT/Myb domain
CDDcd001671.00E-41545No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MGRSPTPKVE LNRGSWTANE DELLREYVRN HGEGKWGKVP KETGKLINLS FLNMNRDYKD  60
NHSKKIDKKG KKDINTNLPS PLVLHENNNA NTTTLVEPSL AKNVTEPSYS NDKVLEISSY  120
DNDVPSWDFM VDLKGEQFRL SEFLQTDFSK LCESNLFPVD GSSASSSEEA AFFYSEAMFK  180
DWIGEEDSIE TAALVMDP
Cis-element ? help Back to Top
SourceLink
PlantRegMap29739.m003610
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015572928.11e-105transcription factor WER
TrEMBLB9RQV91e-143B9RQV9_RICCO; Uncharacterized protein
STRINGXP_002516128.11e-144(Ricinus communis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35515.12e-11high response to osmotic stress 10