PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29739.m003713
Common NameLOC8259066, RCOM_0710450
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family ARF
Protein Properties Length: 1119aa    MW: 125134 Da    PI: 6.5739
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29739.m003713genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.74.5e-23126227199
                    EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                    f+k+lt sd++++g +++p++ ae++      +++++  ++l+ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F   ++++ 
  29739.m003713 126 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfSMQPPA-QELVARDLHDNTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFI--RDEKS 218
                    99*****************************9445444.38************************************************..45677 PP

                    ..EEEEE-S CS
             B3  91 elvvkvfrk 99 
                    +l+++++r+
  29739.m003713 219 QLLLGIRRA 227
                    789999997 PP
2Auxin_resp123.31.7e-40252334183
     Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                    aahaa+++s+F+++YnPras+seFv++++k++ka++++vs+GmRf+m+fete+s  rr++Gt++g+sdldpvrW+ S+Wr+L+
  29739.m003713 252 AAHAAANNSPFTIFYNPRASPSEFVIPFSKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITGISDLDPVRWKTSQWRNLQ 334
                    79*******************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.93E-45116255IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.7E-42118241IPR015300DNA-binding pseudobarrel domain
CDDcd100173.96E-20125226No hitNo description
PfamPF023623.3E-21126227IPR003340B3 DNA binding domain
PROSITE profilePS5086312.365126228IPR003340B3 DNA binding domain
SMARTSM010195.3E-24126228IPR003340B3 DNA binding domain
PfamPF065071.5E-35252334IPR010525Auxin response factor
PfamPF023097.0E-109891078IPR033389AUX/IAA domain
PROSITE profilePS5174526.1929921085IPR000270PB1 domain
SuperFamilySSF542779.32E-910081070No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009638Biological Processphototropism
GO:0009723Biological Processresponse to ethylene
GO:0009734Biological Processauxin-activated signaling pathway
GO:0009785Biological Processblue light signaling pathway
GO:0010311Biological Processlateral root formation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1119 aa     Download sequence    Send to blast
MKVPPNGFMA NSAEGERKSI NSELWHACAG PLVALPPVGS LVVYFPQGHS EQVAASMQKE  60
TDFIPSYPNL PSKLICMLHN VTLHADAETD EVYAQMTLQP VNKYDKEALL ASDMGLKQSR  120
QPTEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQELVARD LHDNTWTFRH  180
IYRGQPKRHL LTTGWSVFVS TKRLFAGDSV LFIRDEKSQL LLGIRRANRQ QPALSSSVIS  240
SDSMHIGILA AAAHAAANNS PFTIFYNPRA SPSEFVIPFS KYNKAMYTQV SLGMRFRMMF  300
ETEESGVRRY MGTITGISDL DPVRWKTSQW RNLQVGWDES TAGERPSRVS IWEVEPVVTP  360
FYICPPPFFR PKFPKQPGMP DDESDIENAF KRAMPWLGDD FGLKDTQSSI FPGLSLVQWM  420
SMQQNNQFPG AQAGFFPSML PSNTLHNNLT TDDPSKLLNF QAPGLSVPSL QFNKANPQNQ  480
VSQLAQPSMA WTQQQQLQQL LQTNINQQQS PVPQQQQQPH PQQQQQRQHP QPQQPSQQQQ  540
PQQQPQQIRQ PPPQVQLQQQ QQQQQQIFQP PVNNGVIAPN QIPNQSMQQP IVYSQLQQQQ  600
QQQLLTSNTQ SQNIPAATKG SYQLTSLPQE TQFQQQMEQQ SNLTQRHQQQ TQLQQSPLQL  660
LQQNLSHRAQ PQTQPQHQVP QLPQPGLSEQ QLHLQLLQKL QQQQQHQLLS PTSSPLQPQM  720
IQQQQMHQQN QQFHQSPLSQ SQQQPISSNS FSTAALMQSQ SFPVSQPQGL QKSPTIIRPH  780
STLTDGDAPS CSTSPSTNNC QISPSNFLNR NQQAPALMMS DSVVEPATNL VQELNGKSDI  840
RVKHEFPGSK GADQLKYKGT MTDQLEASSS GTSYCLDAGN IQQNFSIPTF GLDDVQSHPR  900
NSLPFANNID SLAPDTLLSR GYDSQKDLQN LLSNYGGTPR DIETELSTAA ISSQSFGVPN  960
IPFKPGCSND VAINDSGVLN GGLWANQTQR MRTYTKVQKR GSVGRSIDVT RYKGYDELRH  1020
DLARMFGIEG QLEDPQSSDW KLVYVDHEND ILLVGDDPWE EFVSCVQSIK ILSSAEVQQM  1080
SLDGDLGSVP VPNQACSGTD SGNAWRGHYD DNSAASFNR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1731535545388Auxin response factor 5
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap29739.m003713
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002516230.10.0auxin response factor 19
TrEMBLB9RR610.0B9RR61_RICCO; Auxin response factor
STRINGXP_002516230.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49183352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19