PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29739.m003717
Common NameLOC8259070, RCOM_0710590
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family ERF
Protein Properties Length: 133aa    MW: 14633.4 Da    PI: 9.4989
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29739.m003717genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.84.1e-21859156
            AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                   s+ykGVr +k +g+WvAeIr p++   r r++lg++ taeeAa+a++aa  +l+g+
  29739.m003717  8 SRYKGVRMRK-WGKWVAEIRQPNS---RGRIWLGSYNTAEEAARAYDAALFCLRGP 59
                   79******99.**********944...48************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.66E-30866No hitNo description
PfamPF008478.4E-15858IPR001471AP2/ERF domain
SuperFamilySSF541715.1E-23868IPR016177DNA-binding domain
PROSITE profilePS5103222.84966IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.9E-31967IPR001471AP2/ERF domain
SMARTSM003801.1E-35972IPR001471AP2/ERF domain
PRINTSPR003675.5E-101021IPR001471AP2/ERF domain
PRINTSPR003675.5E-103248IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    Send to blast
MVRSPNSSRY KGVRMRKWGK WVAEIRQPNS RGRIWLGSYN TAEEAARAYD AALFCLRGPS  60
VTLNFPMNPP DINPAQTDLS PLQIREVAFR HARKGDESTT AAAEDLGYLP GESGSLDGIS  120
SGGFYQTPGA WTI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-179661472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap29739.m003717
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002516234.13e-95ethylene-responsive transcription factor ERF017
SwissprotQ84QC24e-33ERF17_ARATH; Ethylene-responsive transcription factor ERF017
SwissprotQ9C5911e-32ERF16_ARATH; Ethylene-responsive transcription factor ERF016
TrEMBLB9RR657e-94B9RR65_RICCO; Transcriptional factor TINY, putative
STRINGXP_002516234.11e-94(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15296813
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.12e-28ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Li SJ, et al.
    The Citrus transcription factor, CitERF13, regulates citric acid accumulation via a protein-protein interaction with the vacuolar proton pump, CitVHA-c4.
    Sci Rep, 2016. 6: p. 20151
    [PMID:26837571]
  3. Yin XR, et al.
    Involvement of an ethylene response factor in chlorophyll degradation during citrus fruit degreening.
    Plant J., 2016. 86(5): p. 403-12
    [PMID:27037684]