PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29739.m003780
Common NameRCOM_0712420
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family MYB_related
Protein Properties Length: 182aa    MW: 20271.4 Da    PI: 4.6482
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29739.m003780genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.41.4e-071443130
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIart 30
                     rg WT+ Ed++l ++++ +G g+W+ I+++
    29739.m003780 14 RGTWTALEDKILTNYIQAHGEGRWRIIPKR 43
                     89*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.3E-12549IPR009057Homeodomain-like
SuperFamilySSF466893.21E-7945IPR009057Homeodomain-like
PROSITE profilePS500907.422948IPR017877Myb-like domain
PfamPF002491.2E-51444IPR001005SANT/Myb domain
CDDcd001672.91E-41643No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MGRSPCCSKE GLRRGTWTAL EDKILTNYIQ AHGEGRWRII PKRAVDSRVS PTEKKVASSQ  60
QDGTEHCITD IKITPSSVTE EAPTLGISNG HINGSSLFAA RENKDSQDFM FQFDMEELFR  120
SDLLTTHEVS CGFSYYSSSS SNDIWHMILS EEMLQDFTAD GASDLSPFTS LVDYGGVWRG  180
DN
Cis-element ? help Back to Top
SourceLink
PlantRegMap29739.m003780
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015572923.14e-89transcription factor MYB82
TrEMBLB9RRC61e-134B9RRC6_RICCO; R2r3-myb transcription factor, putative
STRINGXP_002516295.11e-134(Ricinus communis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49330.11e-16myb domain protein 111