PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29740.m000470
Common NameRCOM_0713160
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family LBD
Protein Properties Length: 82aa    MW: 9512.72 Da    PI: 8.4812
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29740.m000470genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26049.89.7e-1618664694
         DUF260 46 lkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94
                    ++lpe++r da++s+vyeA+ar+rdP+yG++g i++l++q+++l+a +
  29740.m000470 18 HQQLPESQRADAINSMVYEANARIRDPIYGSAGEIRRLKEQVKELQARI 66
                   5889*****************************************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508919.429173IPR004883Lateral organ boundaries, LOB
PfamPF031951.5E-131966IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 82 aa     Download sequence    Send to blast
MKKIYKGSFK LELFICQHQQ LPESQRADAI NSMVYEANAR IRDPIYGSAG EIRRLKEQVK  60
ELQARIGEEV SENESNSRSN FH
Cis-element ? help Back to Top
SourceLink
PlantRegMap29740.m000470
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025014967.17e-39LOB domain-containing protein 11, partial
SwissprotQ9LQR05e-18LBD1_ARATH; LOB domain-containing protein 1
TrEMBLB9SUM73e-53B9SUM7_RICCO; Uncharacterized protein
STRINGXP_002529696.14e-54(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2586033
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.15e-20LOB domain-containing protein 1