PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29740.m000472
Common NameRCOM_0713180
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family LBD
Protein Properties Length: 50aa    MW: 5630.16 Da    PI: 5.5997
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29740.m000472genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26033.41.3e-101376197
         DUF260 61 lvyeAearardPvyGavgvilklqqqleqlkaelall 97
                   +vyeA+ar+r PvyG++g i++l+ q+++l+a++a+ 
  29740.m000472  1 MVYEANARIRHPVYGSAGEIRQLKGQVKELQAQIAEE 37
                   69*******************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031952.9E-8136IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 50 aa     Download sequence    Send to blast
MVYEANARIR HPVYGSAGEI RQLKGQVKEL QAQIAEEVSE NESNSNSNFH
Cis-element ? help Back to Top
SourceLink
PlantRegMap29740.m000472
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025014967.14e-23LOB domain-containing protein 11, partial
TrEMBLB9SUM91e-27B9SUM9_RICCO; Uncharacterized protein
STRINGXP_002529698.12e-28(Ricinus communis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.12e-11LOB domain-containing protein 1