PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

29742.m001380

Common Name

RCOM_0716180

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

Dof

Protein Properties

Length: 163aa MW: 17994.9 Da PI: 8.5905

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
29742.m001380	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	116.9	8e-37	20	73	2	55
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggr 55 ++++l+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGg++ 29742.m001380 20 PQEQLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGAM 73 6899***********************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-24	19	72	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.1E-31	22	73	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.177	24	78	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	26	62	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 163 aa Download sequence Send to blast
MEEISSNACS RPVQERKSRP QEQLNCPRCN STNTKFCYYN NYSLTQPRYF CKTCRRYWTE 60 GGSLRNVPVG GAMPDSQGFP MQEFKPTLSF AVEGLGLGNR YGVRENDGRV FFPLGELKNL 120 SSPSHHHEVD QNKGQGTSAA AATTTTSSTG FWNGMFGGGG GSW

Cis-element ? help Back to Top
Source	Link
PlantRegMap	29742.m001380

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975522	2e-33	HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012470407.1	4e-48	PREDICTED: dof zinc finger protein DOF1.8 isoform X2
TrEMBL	B9SBD9	1e-118	B9SBD9_RICCO; Uncharacterized protein
STRING	XP_002523308.1	1e-119	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF674	34	137

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46590.1	5e-37	Dof family protein

Link Out ? help Back to Top
Phytozome	29742.m001380