PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29742.m001404
Common NameLOC8263508, RCOM_0717730
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family bHLH
Protein Properties Length: 615aa    MW: 67943.2 Da    PI: 6.4109
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29742.m001404genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.55.1e-13446492455
                    HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                    +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI++Lq
  29742.m001404 446 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAIAYINELQ 492
                    799***********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.6E-5353241IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.047442491IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.99E-15445496No hitNo description
SuperFamilySSF474593.79E-18445504IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-10446492IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-18446505IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.4E-17448497IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0055114Biological Processoxidation-reduction process
GO:0032440Molecular Function2-alkenal reductase [NAD(P)] activity
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 615 aa     Download sequence    Send to blast
MKIEIGMGGG GAWNDEDRAM VATVLGTKAF EYLVSNSVSN ESLLMAIGSD ENLQNKLSDL  60
VDRPNASNFS WNYAIFWQIS CSKSGDWVLG WGDGSCREPR EGEEFEATRI LNLRLEDETQ  120
QRMRKRVLQN LHTLSGESDE DNYALGLDRV TDTEMFFLAS MYFSFPRGEG GPGKCLASGK  180
HVWIPDAFKS GSDYCVRSFL AKSAGIKTIV LVATDVGVVE LGSVRSLPES FEMVQSIRST  240
FSTHNSVKPL VSVAPPAPAL PAVNEKKGEI SLFSNVGIVE RVEGIPKIFG QDLNNSAHGH  300
GHGFREKLAV RKMEERPPWD VYQNGNRLSF PGTRNGLHGS SWAHSFSLKQ GTPAEVYGSQ  360
ATTNNLQELV NGVREDYRLK NYPPQKQVQM QIDFSGPSVI GRPVNVESEH SDVEVPSKEE  420
GPGNSDDRRP RKRGRKPANG REEPLNHVEA ERQRREKLNQ RFYALRAVVP NISKMDKASL  480
LGDAIAYINE LQAKLKSMEA EREKFGSSSR DASGLEANTN AKNQSQAPEV DIQASHDEVI  540
VRVSCPLDLH PASRVIQAFK ESQITVLDSK LTAANDTVFH TFVIKSQGSD QLTKEKLMAV  600
FSHESNSLQQ LSSVG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A9e-30440502264Transcription factor MYC2
5gnj_B9e-30440502264Transcription factor MYC2
5gnj_E9e-30440502264Transcription factor MYC2
5gnj_F9e-30440502264Transcription factor MYC2
5gnj_G9e-30440502264Transcription factor MYC2
5gnj_I9e-30440502264Transcription factor MYC2
5gnj_M9e-30440502264Transcription factor MYC2
5gnj_N9e-30440502264Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1427435RRPRKRGRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00100PBMTransfer from AT1G01260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap29742.m001404
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002523332.10.0transcription factor bHLH13
SwissprotA0A3Q7ELQ20.0MTB1_SOLLC; Transcription factor MTB1
TrEMBLB9SBG30.0B9SBG3_RICCO; DNA binding protein, putative
STRINGXP_002523332.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54483254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.30.0bHLH family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Sun H,Fan HJ,Ling HQ
    Genome-wide identification and characterization of the bHLH gene family in tomato.
    BMC Genomics, 2015. 16: p. 9
    [PMID:25612924]
  3. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]