PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29751.m001877
Common NameRCOM_0733010
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family BBR-BPC
Protein Properties Length: 84aa    MW: 8873.82 Da    PI: 10.0898
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29751.m001877genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind34.27.9e-11130246275
      GAGA_bind 246 vstkrrgaRiagrKmSqgafkklLekLaae 275
                    +stk  gaRiagrKm qgafkk+L+kL ae
  29751.m001877   1 MSTKIHGARIAGRKMCQGAFKKVLKKLVAE 30 
                    79999**********************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062172.1E-9131IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
Sequence ? help Back to Top
Protein Sequence    Length: 84 aa     Download sequence    Send to blast
MSTKIHGARI AGRKMCQGAF KKVLKKLVAE ETVVHFGCCR QKQCGGGDVL VDIGWVCALL  60
AHFRGGLLAV AVAVAVVLLV LLVT
Cis-element ? help Back to Top
SourceLink
PlantRegMap29751.m001877
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB9S3E41e-50B9S3E4_RICCO; Uncharacterized protein
STRINGXP_002520513.12e-51(Ricinus communis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01930.22e-09basic pentacysteine1