PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29751.m001878
Common NameLOC8284108, RCOM_0733120
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family C2H2
Protein Properties Length: 181aa    MW: 20752.5 Da    PI: 7.5359
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29751.m001878genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.30.000123052123
                   EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                   y C+ Cg+ F +   L  H+++H
  29751.m001878 30 YICNFCGREFGSAQALGGHMNVH 52
                   89*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.57E-72757No hitNo description
Gene3DG3DSA:3.30.160.603.3E-42854IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00633052IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.7183057IPR007087Zinc finger, C2H2
PfamPF139128.6E-73053IPR007087Zinc finger, C2H2
PROSITE patternPS0002803252IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MERARCCEED AFAEDAAGAF GAFVWPPRSY ICNFCGREFG SAQALGGHMN VHRRDRARLK  60
QSPGIENDYL HHHKQQPQQH QRQNLHNILV YDPDSIAKFS TPLTEENSQK PEVAESDGKK  120
ENVSRKRWRC DELPLPLFPF FTKISKPNSM KKVHLQEEVK GLCLGATQDL DLELRLGFSL  180
F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A6e-112552229superman protein
2l1o_A6e-112552229Transcriptional regulator SUPERMAN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap29751.m001878
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002520514.11e-135transcriptional regulator SUPERMAN
TrEMBLB9S3E51e-134B9S3E5_RICCO; Transcriptional regulator SUPERMAN, putative
STRINGXP_002520514.11e-134(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17763078
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06070.14e-20C2H2 family protein