PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

29769.m000449

Common Name

LOC8277861, RCOM_0763260

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

C2H2

Protein Properties

Length: 417aa MW: 46675.1 Da PI: 4.6011

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
29769.m000449	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.2	0.00056	172	190	5	23
TTTEEESSHHHHHHHHHHT CS zf-C2H2 5 dCgksFsrksnLkrHirtH 23 +C+k F++ ++L rH ++ 29769.m000449 172 HCDKKFNTAEELARHVVNC 190 7**************8765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF49599	7.52E-5	197	242	IPR008974	TRAF-like
PROSITE profile	PS50145	12.962	209	270	IPR001293	Zinc finger, TRAF-type
Pfam	PF02176	3.2E-12	214	272	IPR001293	Zinc finger, TRAF-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009941	Cellular Component	chloroplast envelope
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 417 aa Download sequence Send to blast
MEDVELVPEK EKIEDGKEGC PSFHCDLYDA EIVHKIAQVL LPGLAAACVD NTTGGIFRSP 60 ASVAVDLRKE MIDYLTQRSE SFVAESIILE DGPNTEVSDH PYDIIADFVD DFASSKRNFF 120 SRVSGWLLSE KREDNVDDFA QEMEINGFWL MDRRELVAQT LVKNVDFKNT FHCDKKFNTA 180 EELARHVVNC NFRSMNCRNE GCNAIFCASH LENHDSICPF KIIPCEQKCS DNIMRREMDR 240 HCITVCPMKL VNCPFYAVGC QSTIARHMIQ KHCSDDLQLH LVCALKNIHK GASEEDLKQR 300 VDQIVQSSSG QLDATRDARS LTLRVRDLDS KLGPLEANTA NKSSEEGTED PNHITYKPIE 360 AEADADAGNK DIEESYEDGN VGDGKPTNTT NKVGKESTET SNLTSHASEE AQTQVLI

Sequence ? help Back to Top

Protein Sequence Length: 417 aa Download sequence Send to blast

MEDVELVPEK EKIEDGKEGC PSFHCDLYDA EIVHKIAQVL LPGLAAACVD NTTGGIFRSP  60
ASVAVDLRKE MIDYLTQRSE SFVAESIILE DGPNTEVSDH PYDIIADFVD DFASSKRNFF  120
SRVSGWLLSE KREDNVDDFA QEMEINGFWL MDRRELVAQT LVKNVDFKNT FHCDKKFNTA  180
EELARHVVNC NFRSMNCRNE GCNAIFCASH LENHDSICPF KIIPCEQKCS DNIMRREMDR  240
HCITVCPMKL VNCPFYAVGC QSTIARHMIQ KHCSDDLQLH LVCALKNIHK GASEEDLKQR  300
VDQIVQSSSG QLDATRDARS LTLRVRDLDS KLGPLEANTA NKSSEEGTED PNHITYKPIE  360
AEADADAGNK DIEESYEDGN VGDGKPTNTT NKVGKESTET SNLTSHASEE AQTQVLI

Cis-element ? help Back to Top
Source	Link
PlantRegMap	29769.m000449

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015579062.1	0.0	uncharacterized protein LOC8277861 isoform X1
Refseq	XP_015579063.1	0.0	uncharacterized protein LOC8277861 isoform X1
Refseq	XP_025014380.1	0.0	uncharacterized protein LOC8277861 isoform X1
TrEMBL	B9SJL4	0.0	B9SJL4_RICCO; Uncharacterized protein
STRING	XP_002526183.1	0.0	(Ricinus communis)

Link Out ? help Back to Top
Phytozome	29769.m000449
Entrez Gene	8277861