PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29771.m000072
Common NameRCOM_0766690
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family WRKY
Protein Properties Length: 215aa    MW: 24333.8 Da    PI: 7.3781
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29771.m000072genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.14.8e-30118176159
                    ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                    +dDg++WrKYG+K+vk+s++pr+YY+C+s gC+vkk+ver++edpk+v++tY g Hnh+
  29771.m000072 118 MDDGFKWRKYGKKSVKNSPHPRNYYKCSSGGCSVKKRVERDREDPKYVITTYDGMHNHQ 176
                    59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-32105178IPR003657WRKY domain
SuperFamilySSF1182901.57E-27111178IPR003657WRKY domain
PROSITE profilePS5081131.559113178IPR003657WRKY domain
SMARTSM007741.7E-33118177IPR003657WRKY domain
PfamPF031061.1E-23119176IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0042742Biological Processdefense response to bacterium
GO:0050832Biological Processdefense response to fungus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MFDSSFLAMD YPANPNPNNY NYSHFDPIMD PSLQPVEFQL SDFLMLDGGF GDDSSSQSTM  60
VLSDQFASGA STEYSSGTAA SATSENANND KWKKGVKKEK AEVGHRVAFR TKSELEIMDD  120
GFKWRKYGKK SVKNSPHPRN YYKCSSGGCS VKKRVERDRE DPKYVITTYD GMHNHQTPCV  180
VYYNHHHRHH YHQDQVPVMN PNGWNLQASS PSSSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-26108178777Probable WRKY transcription factor 4
2lex_A3e-26108178777Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap29771.m000072
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002533354.31e-162probable WRKY transcription factor 51
TrEMBLB9T5351e-161B9T535_RICCO; WRKY transcription factor, putative
STRINGXP_002533354.11e-162(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF112034110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26170.17e-40WRKY DNA-binding protein 50