PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

29780.m001355

Common Name

LOC8283300, RCOM_0775080

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

Trihelix

Protein Properties

Length: 312aa MW: 35623.1 Da PI: 9.7256

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
29780.m001355	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	63.8	3.9e-20	49	140	2	86
trihelix 2 WtkqevlaLiearremeerlrr.......gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 Wt qe+l+Li+a++ ++er ++ +k + +W++v ++++++g+ rs++qC++kw+nl +++kk+++ + + ++ +ss++p + +e 29780.m001355 49 WTIQETLTLITAKKLDDERRSKpstvastSKPGELRWKWVENYCWAHGCFRSQNQCNDKWDNLLRDFKKVRDYQARSNDSDSSSFPSYWTME 140 ************888887753333322568899*************************************9999*******998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.5E-5	39	113	IPR009057	Homeodomain-like
PROSITE profile	PS50090	7.201	41	112	IPR017877	Myb-like domain
Pfam	PF13837	2.6E-14	48	141	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 312 aa Download sequence Send to blast
MSEPPPPLQQ PPPLPPPPLH LPLLPFSTIT TTTTTISSSS NREYRKGNWT IQETLTLITA 60 KKLDDERRSK PSTVASTSKP GELRWKWVEN YCWAHGCFRS QNQCNDKWDN LLRDFKKVRD 120 YQARSNDSDS SSFPSYWTME RHQRKFYNLP SNMSLEVFEA LNEVVQRRYN TNITTTPQQQ 180 HVSAVAPPPV PVTSVREAMP ETVVMDAPAV PERSESSATE SSDKHDGNTG PKRRKVRNIG 240 ASIKRSASIL AQTIRNCEEK KHKRHQELLE FEQRRLQLEE TRNEVNKQGM TDLVLAVTKL 300 STAIQSLISN QT

Cis-element ? help Back to Top
Source	Link
PlantRegMap	29780.m001355

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002521872.1	0.0	trihelix transcription factor ASR3
TrEMBL	B9S7A3	0.0	B9S7A3_RICCO; Transcription factor, putative
STRING	XP_002521872.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6804	32	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	3e-44	Trihelix family protein

Link Out ? help Back to Top
Phytozome	29780.m001355
Entrez Gene	8283300