PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29782.m000119
Common NameLOC8273018, RCOM_0779180
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family MIKC_MADS
Protein Properties Length: 235aa    MW: 27758.5 Da    PI: 10.0288
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29782.m000119genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF82.92e-26960151
                   S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS.EEEEEE- CS
         SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg.klyeyss 51
                   k+ien +nrqvt+skRrngi+KKA+EL vLCda+v++i+fs++g k++e++s
  29782.m000119  9 KKIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNSGrKFHEFIS 60
                   68*****************************************956999975 PP
2K-box86.94.2e-2972170199
          K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 
                    yqk+ g +l+ +++e++q +l+kL++ +++L+r +R+++GedL++Ls+ eL+ Leq++  +l  iR++K++++ +q+++ +kke++l e++++L +
  29782.m000119  72 YQKTLGIDLWITHYERMQDHLKKLNDINNKLRRDIRQRMGEDLNDLSFDELRGLEQRMAPALHMIRERKYHFIETQTNTKRKKERNLVERHRELLQ 167
                    78899999**************************************************************************************99 PP

          K-box  97 kle 99 
                    ++e
  29782.m000119 168 RYE 170
                    876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004328.7E-38161IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.114162IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.98E-36295IPR002100Transcription factor, MADS-box
CDDcd002651.00E-37281No hitNo description
PRINTSPR004043.5E-24323IPR002100Transcription factor, MADS-box
PfamPF003191.3E-221054IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-242338IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-243859IPR002100Transcription factor, MADS-box
PfamPF014861.5E-2083169IPR002487Transcription factor, K-box
PROSITE profilePS5129715.07185175IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010093Biological Processspecification of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MGRGKIEIKK IENPTNRQVT YSKRRNGIFK KAQELTVLCD AKVSLIMFSN SGRKFHEFIS  60
PGTTTKKIFD QYQKTLGIDL WITHYERMQD HLKKLNDINN KLRRDIRQRM GEDLNDLSFD  120
ELRGLEQRMA PALHMIRERK YHFIETQTNT KRKKERNLVE RHRELLQRYE ANCEDPQYGL  180
VDYEGDYESA IALANGASNL YSFRLHHGHP EPPNLHXTGK SHIFILISLH KHNLI
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00077ChIP-seqTransfer from AT3G54340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap29782.m000119
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002533305.11e-175floral homeotic protein DEFICIENS
SwissprotQ003J21e-117TM6_VITVI; Agamous-like MADS-box protein TM6
TrEMBLB9T4Y61e-174B9T4Y6_RICCO; Floral homeotic protein DEFICIENS, putative
STRINGXP_002533305.11e-175(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27353375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.12e-72MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]