PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29788.m000340
Common NameLOC8286118, RCOM_0788410
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family MYB
Protein Properties Length: 244aa    MW: 27851.4 Da    PI: 8.1981
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29788.m000340genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.18.4e-181057148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT++Ed ll++ v+++G ++W+ Ia+  g++Rt+k+c++rw +yl
    29788.m000340 10 KGPWTEQEDILLINFVHLFGDRRWDFIAKVSGLNRTGKSCRLRWVNYL 57
                     79********************************************97 PP
2Myb_DNA-binding56.85.2e-1863108148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T++E++l +++++++G++ W++Iar+++ gRt++++k++w++++
    29788.m000340  63 RGKMTPQEEKLVLELHAKWGNR-WSRIARKLP-GRTDNEIKNYWRTHM 108
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.721557IPR017930Myb domain
SuperFamilySSF466896.11E-308104IPR009057Homeodomain-like
SMARTSM007173.0E-16959IPR001005SANT/Myb domain
PfamPF002496.6E-171057IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-211164IPR009057Homeodomain-like
CDDcd001674.47E-121257No hitNo description
PROSITE profilePS5129426.96858112IPR017930Myb domain
SMARTSM007175.2E-1762110IPR001005SANT/Myb domain
PfamPF002491.8E-1663107IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.8E-2465111IPR009057Homeodomain-like
CDDcd001672.89E-1265108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MKMMQDEIRK GPWTEQEDIL LINFVHLFGD RRWDFIAKVS GLNRTGKSCR LRWVNYLHPG  60
LKRGKMTPQE EKLVLELHAK WGNRWSRIAR KLPGRTDNEI KNYWRTHMRK KAQERKRAMS  120
PSSSSSNSSS GSNITTVNSS SPFPETGEAS FYDTGGPDSS ALGGKSREEV QGGEKGYSMD  180
EIWKDIENTI GPVCDGFSKE GCNFSCPSIV SPPWDYCPEP LWRMDDEESK MLLSYEYGTM  240
FLTG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C3e-28111249159MYB PROTO-ONCOGENE PROTEIN
1h89_C3e-28111249159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap29788.m000340
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0346517e-62KM034651.1 Jatropha curcas clone JcMYB031 MYB family protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002531120.10.0transcription factor MYB59 isoform X1
SwissprotQ9LX828e-97MYB48_ARATH; Transcription factor MYB48
TrEMBLB9SYQ10.0B9SYQ1_RICCO; R2r3-myb transcription factor, putative
STRINGXP_002531120.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43783359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46130.14e-95myb domain protein 48
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nishida S,Kakei Y,Shimada Y,Fujiwara T
    Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana.
    Plant J., 2017. 91(4): p. 741-753
    [PMID:28586097]
  4. Imran QM, et al.
    Transcriptome profile of NO-induced Arabidopsis transcription factor genes suggests their putative regulatory role in multiple biological processes.
    Sci Rep, 2018. 8(1): p. 771
    [PMID:29335449]