PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

29790.m000811

Common Name

RCOM_0789870

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

MYB_related

Protein Properties

Length: 217aa MW: 25156.3 Da PI: 6.7161

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
29790.m000811	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	63.7	3.5e-20	13	60	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+ll ++vk++G g+W+++a + g++R++k+c++rw +yl 29790.m000811 13 KGPWTPEEDKLLSEYVKLHGEGRWSSVAMYAGLNRSGKSCRLRWVNYL 60 79********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	25.953	8	64	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	4.0E-23	9	63	IPR009057	Homeodomain-like
SMART	SM00717	4.2E-18	12	62	IPR001005	SANT/Myb domain
Pfam	PF00249	2.5E-19	13	60	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.58E-22	14	87	IPR009057	Homeodomain-like
CDD	cd00167	2.79E-13	15	60	No hit	No description
Gene3D	G3DSA:1.10.10.60	3.2E-6	64	87	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009737	Biological Process	response to abscisic acid
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 217 aa Download sequence Send to blast
MVGWGIPEQG WKKGPWTPEE DKLLSEYVKL HGEGRWSSVA MYAGLNRSGK SCRLRWVNYL 60 RPGLKRSQIT PQEEGIIIEL HALWGNKTHF KRKGKTSKKQ EKLLDSQDLE QQQQEQQEQQ 120 HQLGDDMKMV TNTSDENMHE IQGKQENMVF KYPTLGDQCL PVMSQDVTSW TDFLMDDGLI 180 WGGLWNFDDQ VVHHTSNCSK IAKQNQNNYY HNGGCIF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	2e-13	5	87	1	80	B-MYB
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	29790.m000811

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX584688	3e-33	JX584688.1 Gossypium hirsutum clone NBRI_GE18056 microsatellite sequence.
GenBank	KM034650	3e-33	KM034650.1 Jatropha curcas clone JcMYB030 MYB family protein gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015578909.1	1e-146	transcription factor MYB82
TrEMBL	B9SIU5	1e-161	B9SIU5_RICCO; R2r3-myb transcription factor, putative
STRING	XP_002525914.1	1e-162	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1182	34	108

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G30210.1	5e-47	myb domain protein 121

Link Out ? help Back to Top
Phytozome	29790.m000811