PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29794.m003310
Common NameLOC8259574, RCOM_0797320
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family LBD
Protein Properties Length: 191aa    MW: 21088.6 Da    PI: 7.3401
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29794.m003310genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260115.43.5e-36171181101
         DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                    aCaaCk+ rrkC++dC+lap+fp++ p++f+n+h+lFG++n+l+ lk+l + +++++a++s+++eA+++a+dPv G+++ + +l++++++l+ el 
  29794.m003310  17 ACAACKFRRRKCSQDCPLAPHFPSDAPEDFQNAHRLFGVANILESLKNLqDFDQKRAAAKSMIFEANVWASDPVGGCHQYVCQLKNRIQNLEMELR 112
                    7************************************************445669***************************************** PP

         DUF260  96 llkeel 101
                     l++++
  29794.m003310 113 ILRNQI 118
                    999885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.37616118IPR004883Lateral organ boundaries, LOB
PfamPF031953.1E-3517115IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MHNSSSNSTI SSTRSQACAA CKFRRRKCSQ DCPLAPHFPS DAPEDFQNAH RLFGVANILE  60
SLKNLQDFDQ KRAAAKSMIF EANVWASDPV GGCHQYVCQL KNRIQNLEME LRILRNQIVL  120
YRRLAGSSSS SLNPPPLGYA TPLQCTGYGP IPNLDLQERT NQENQEPRST IAEAEGLSSS  180
SEDAVPFLGG F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-191812112114LOB family transfactor Ramosa2.1
5ly0_B1e-191812112114LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap29794.m003310
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002516432.11e-141LOB domain-containing protein 7
TrEMBLB9RRR31e-140B9RRR3_RICCO; LOB domain-containing protein, putative
STRINGXP_002516432.11e-140(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2781523
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72980.11e-29LOB domain-containing protein 7