PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29794.m003311
Common NameRCOM_0797330
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family LBD
Protein Properties Length: 254aa    MW: 28859.8 Da    PI: 4.477
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29794.m003311genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260101.29.8e-3223121198
         DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                    aCaaC ++rrkC++dC++apyfpa+ +++f+nv++lFG ++ +k+l+ l+++  + da++s++yeA+ara+ Pv G+ ++i+  q ++e  +  l+
  29794.m003311  23 ACAACSYQRRKCEPDCFYAPYFPADARNDFRNVNRLFGLAKFMKILNGLNDSGqKGDAARSMIYEANARAKFPVGGCSQIISIFQYDIEYIEMVLK 118
                    7************************************************666549******************************99999888777 PP

         DUF260  96 llk 98 
                     ++
  29794.m003311 119 IVR 121
                    665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.6222124IPR004883Lateral organ boundaries, LOB
PfamPF031955.8E-3123120IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MYGSSSNSSS TSSKDIRSTE SRACAACSYQ RRKCEPDCFY APYFPADARN DFRNVNRLFG  60
LAKFMKILNG LNDSGQKGDA ARSMIYEANA RAKFPVGGCS QIISIFQYDI EYIEMVLKIV  120
RNWIAPEREL ASSSSSSSNP PPIHNAAQFI GYGPNQEIQV QELMQRENQE GERDQKNAFQ  180
RELARSSYCN NPPIHNGIQG YDVNQEIQEQ ELMQQDNQEQ ELTQQENQER ATTEADEFSL  240
SVEELELLVG MFDR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-202411412101LOB family transfactor Ramosa2.1
5ly0_B1e-202411412101LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap29794.m003311
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002516433.21e-137uncharacterized protein LOC8259575
TrEMBLB9RRR40.0B9RRR4_RICCO; LOB domain-containing protein, putative
STRINGXP_002516433.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2781523
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.13e-27LOB domain-containing protein 22