PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

29794.m003333

Common Name

LOC8275608, RCOM_0797750

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

MYB_related

Protein Properties

Length: 277aa MW: 30414.3 Da PI: 10.2237

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
29794.m003333	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	45.2	2.1e-14	112	156	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+++++ + ++lG+g+W+ I+r + ++Rt+ q+ s+ qky 29794.m003333 112 PWTAEEHQIFLLGLQKLGKGDWRGISRNFVTTRTPTQVASHAQKY 156 8*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50158	8.532	3	18	IPR001878	Zinc finger, CCHC-type
PROSITE profile	PS51294	16.778	105	161	IPR017930	Myb domain
SuperFamily	SSF46689	1.65E-17	106	162	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	7.4E-18	108	160	IPR006447	Myb domain, plants
Gene3D	G3DSA:1.10.10.60	6.1E-12	109	155	IPR009057	Homeodomain-like
SMART	SM00717	6.8E-11	109	159	IPR001005	SANT/Myb domain
Pfam	PF00249	1.3E-11	112	156	IPR001005	SANT/Myb domain
CDD	cd00167	2.25E-9	112	157	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 277 aa Download sequence Send to blast
MGRKCSHCGN VGHNSRTCHF EKESLRLFGV KLHSNSSSSS HLFLKKSFSV DCLSSSSTTT 60 TPPPPPPPSS SSSSSTTTTS TFGDNVDIKL STGYLSEGLA APTQEIRKKG VPWTAEEHQI 120 FLLGLQKLGK GDWRGISRNF VTTRTPTQVA SHAQKYFLRQ NSFNKRKRRP SLFDMESSQS 180 SISKLNERNN FCGLALKNTE AYSPGSYSKN LGLTHHLILP TWLNEPLISS RPTSFGLTSR 240 NVQHLAPDLE LKLAAPASLD QSKSCSDDFL IGPIRVT

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor (PubMed:23888064, PubMed:24806884). Direct regulator of the transcription of peroxidase (Prxs) and reactive oxygen species (ROS)-related genes via the recognition of 5'-ATCACA-3' motif (PubMed:24806884). Binds to 5'-TATCCA-3' motif (TA box) and represses the activity of corresponding promoters (e.g. sugar response genes) (PubMed:25920996). Regulates hypocotyl elongation in response to darkness by enhancing auxin accumulation in a phytochrome-interacting factor (PIF) proteins-dependent manner. Promotes lateral roots formation (PubMed:23888064). Promotes cell expansion during leaves development via the modulation of cell wall-located Prxs (PubMed:24806884). Plays a critical role in developmentally regulated and dark-induced onset of leaf senescence by repressing the transcription of several genes involved in chloroplast function and responses to light and auxin. Promotes responses to auxin, abscisic acid (ABA), and ethylene (PubMed:25920996). {ECO:0000269\|PubMed:23888064, ECO:0000269\|PubMed:24806884, ECO:0000269\|PubMed:25920996}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	29794.m003333

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Slightly induced by CdCl(2) (PubMed:16463103). Accumulates in the dark (PubMed:23888064, PubMed:25920996). Diurnal expression pattern with maximal levels in the morning (at protein level). Specifically induced during leaf expansion (PubMed:24806884). Expressed in old and dark-treated leaves (PubMed:25920996). {ECO:0000269\|PubMed:16463103, ECO:0000269\|PubMed:23888064, ECO:0000269\|PubMed:24806884, ECO:0000269\|PubMed:25920996}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002516455.1	0.0	transcription factor KUA1 isoform X1
Swissprot	Q9LVS0	5e-47	KUA1_ARATH; Transcription factor KUA1
TrEMBL	B9RRT6	0.0	B9RRT6_RICCO; Uncharacterized protein
STRING	XP_002516455.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3213	32	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47390.1	1e-42	MYB_related family protein

Link Out ? help Back to Top
Phytozome	29794.m003333
Entrez Gene	8275608

Publications ? help Back to Top
Liu C,Wang B,Li Z,Peng Z,Zhang J TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth. Plant Physiol., 2018. 176(1): p. 742-756 [PMID:29122985]