PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29794.m003381
Common NameRCOM_0799320
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family ERF
Protein Properties Length: 270aa    MW: 29451.9 Da    PI: 5.0253
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29794.m003381genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.21e-1851101155
            AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                    + y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a+++++g
  29794.m003381  51 PVYRGVRMRN-WGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDVAALSIKG 101
                    68*****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.4E-1351101IPR001471AP2/ERF domain
SMARTSM003803.3E-3652115IPR001471AP2/ERF domain
PROSITE profilePS5103223.4252109IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-2152110IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.8E-3252110IPR001471AP2/ERF domain
PRINTSPR003672.9E-105364IPR001471AP2/ERF domain
CDDcd000185.81E-3153111No hitNo description
PRINTSPR003672.9E-107591IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MKNEKALSTS NKAANFASKT QRQEALVEEQ QDPESPTNKK IKRIRDTNKH PVYRGVRMRN  60
WGKWVSEIRE PRKKSRIWLG TFPTPEMAAR AHDVAALSIK GNSAILNFPE LADSLPRPAS  120
LAPRDVQIAA AKAAQMDTFD KKITDSTAAT PMTATTTTSS SSLSLSSSDS CLSSLVSAMD  180
LSTTGPEEEL SEIVELPSLG TSYESSELRS DFVYVDSVDG WVYPPPWLEE SHVGGGGCLF  240
DDLTVAIEGL MPNLSTASSS SFGQGWFWNN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-18491101173Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap29794.m003381
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015573080.10.0ethylene-responsive transcription factor TINY, partial
SwissprotQ9LYD36e-73DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLB9RRY30.0B9RRY3_RICCO; Transcriptional factor TINY, putative
STRINGXP_002516502.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.17e-73ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]