PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29797.m000353
Common NameRCOM_0806290
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family NAC
Protein Properties Length: 294aa    MW: 33698.5 Da    PI: 7.4999
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29797.m000353genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM149.22e-46111373128
            NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..k 96 
                    pGfrFhPt+eel+++yLk+ v gkkl++ ++i+ ++iy+++P++Lp  ++++e+ewyfF++rd+++ +g r+nr+t++g+Wkatg+d++++s    
  29797.m000353  11 PGFRFHPTEEELLDFYLKNMVFGKKLRF-DIIRFLNIYHHDPSELPGLARNGEREWYFFVPRDRRHGSGGRPNRTTANGFWKATGSDRKIVSLsdP 105
                    9*************************99.99***************8888999*************************************997667 PP

            NAM  97 gelvglkktLvfykgrapkgektdWvmheyrl 128
                    ++++gl+ktLvfykgrap+g+ktdWvm+eyrl
  29797.m000353 106 KRVIGLRKTLVFYKGRAPRGTKTDWVMNEYRL 137
                    788***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100552.7799155IPR003441NAC domain
SuperFamilySSF1019412.22E-5510155IPR003441NAC domain
PfamPF023653.1E-2511137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009965Biological Processleaf morphogenesis
GO:0010200Biological Processresponse to chitin
GO:0045792Biological Processnegative regulation of cell size
GO:0048281Biological Processinflorescence morphogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MEEMASALDL PGFRFHPTEE ELLDFYLKNM VFGKKLRFDI IRFLNIYHHD PSELPGLARN  60
GEREWYFFVP RDRRHGSGGR PNRTTANGFW KATGSDRKIV SLSDPKRVIG LRKTLVFYKG  120
RAPRGTKTDW VMNEYRLPDS CPLPKDIVLC KIYRKATSLK VLEQRAAMEE EIKTIHVSPA  180
LSPLSSSLDN MSFCSQQEDS MLPTSLQQVV LKKEVEDMVI LGKDSYNGDN NCDEGPKETK  240
RSSSLQLPVG KDELPELEVP KLSMDWSQDN LWLNSPWLQS LAQNLTPYAN ILNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-431115517168Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269|PubMed:26834774}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap29797.m000353
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269|PubMed:26834774}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002525740.20.0NAC domain-containing protein 22
SwissprotQ10S653e-93NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBLB9SIC10.0B9SIC1_RICCO; NAC domain-containing protein, putative
STRINGXP_002525740.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62143251
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17040.11e-113NAC domain containing protein 36
Publications ? help Back to Top
  1. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]