PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29801.m003096
Common NameLOC8288116, RCOM_0811370
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family MYB
Protein Properties Length: 245aa    MW: 27414.6 Da    PI: 6.8847
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29801.m003096genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding62.86.7e-201156147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W++eEd+ll+++v+++G ++W++I++ ++ gR++k+c++rw + 
    29801.m003096 11 KGPWSPEEDLLLKKLVQRHGARNWTLISKSIP-GRSGKSCRLRWCNQ 56
                     79******************************.***********985 PP
2Myb_DNA-binding54.23.3e-1765107347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++ +eEde++vda+ ++G++ W++Iar ++ gRt++ +k++w++ 
    29801.m003096  65 PFAPEEDEIIVDAHSRFGNK-WAAIARLLN-GRTDNAIKNHWNST 107
                      6779****************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.796661IPR017930Myb domain
SuperFamilySSF466899.36E-328104IPR009057Homeodomain-like
SMARTSM007175.3E-171059IPR001005SANT/Myb domain
PfamPF002499.5E-201156IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-251264IPR009057Homeodomain-like
CDDcd001671.81E-151355No hitNo description
SMARTSM007178.9E-1462110IPR001005SANT/Myb domain
PROSITE profilePS5129419.96663112IPR017930Myb domain
PfamPF002492.8E-1465107IPR001005SANT/Myb domain
CDDcd001672.75E-1065108No hitNo description
Gene3DG3DSA:1.10.10.609.4E-2365111IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MDSESAFDRV KGPWSPEEDL LLKKLVQRHG ARNWTLISKS IPGRSGKSCR LRWCNQLSPE  60
VEHRPFAPEE DEIIVDAHSR FGNKWAAIAR LLNGRTDNAI KNHWNSTLKR KYGAAFNNDD  120
GDRLQEKERD KKALSFRSSS SLSSGSDVSD TELPVTSSSL QQLGTTHDRV QSAAYHDDDD  180
DGPSTELTLS FPGKGCIELS AGAKELTFSI EEHTEKNALL APKLIATIQE MIKTEVKNYM  240
KANMR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A3e-39101113104MYB PROTO-ONCOGENE PROTEIN
1mse_C3e-39101113104C-Myb DNA-Binding Domain
1msf_C3e-39101113104C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap29801.m003096
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002518677.10.0transcription factor MYB77
SwissprotO231604e-65MYB73_ARATH; Transcription factor MYB73
TrEMBLB9RY930.0B9RY93_RICCO; R2r3-myb transcription factor, putative
STRINGXP_002518677.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84334124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.16e-65myb domain protein 73
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]