PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29804.m001498
Common NameRCOM_0816670
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family bHLH
Protein Properties Length: 309aa    MW: 34712.8 Da    PI: 9.4994
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29804.m001498genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.78.5e-13130177355
                    HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    + h ++Er+RR+++ ++f  L  ++P +     kK++Ka++L  A++Y+k+Lq
  29804.m001498 130 QDHIIAERKRREKLSQRFIALSAIVPGL-----KKMDKASVLGDAIKYLKQLQ 177
                    6799************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.948127176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-10130177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.67E-17131192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.0E-17131189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.56E-12132181No hitNo description
SMARTSM003531.2E-14133182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0055114Biological Processoxidation-reduction process
GO:0032440Molecular Function2-alkenal reductase [NAD(P)] activity
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MAAFGENMQH SLSHQNFNLK ASMETSPLSG INLRPTKQQL KPNENYLHSS FSPNILSFAN  60
SANTNHPMGL VVKPKEEAAV YYKSIHTLPS EHMLISQGNS LENHNYVFNA CQGAKRISTN  120
NNNGRISQSQ DHIIAERKRR EKLSQRFIAL SAIVPGLKKM DKASVLGDAI KYLKQLQERV  180
KTLEEQTKKK TMESVVIVKK SRLVFGEEDT SSSDESFSKG PFDEPLPEIE ARICDKHVLI  240
RIHCEKRKGV LEKTIAEIEK LHLSVTNSSV LTFGSSALDV TIIAQMDNEF SMSVKDLVKD  300
LHSAFKLFM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-14131180857Transcription factor MYC2
5gnj_B3e-14131180857Transcription factor MYC2
5gnj_E3e-14131180857Transcription factor MYC2
5gnj_F3e-14131180857Transcription factor MYC2
5gnj_G3e-14131180857Transcription factor MYC2
5gnj_I3e-14131180857Transcription factor MYC2
5gnj_M3e-14131180857Transcription factor MYC2
5gnj_N3e-14131180857Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1135140ERKRRE
2136141RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMap29804.m001498
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002518295.30.0transcription factor bHLH25
TrEMBLB9RX260.0B9RX26_RICCO; DNA binding protein, putative
STRINGXP_002518295.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45534164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.16e-66bHLH family protein