PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29805.m001471
Common NameLOC8283808, RCOM_0819270
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family S1Fa-like
Protein Properties Length: 89aa    MW: 9981.76 Da    PI: 10.2219
Description S1Fa-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29805.m001471genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1S1FA134.13.4e-422289370
           S1FA  3 vakveakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70
                   v+ ve+kG+nPGlivllv+gg++l+fl+gny+ly+yaqk+lPP+kkkPvskkk+kre+l+qGv++PGe
  29805.m001471 22 VKDVETKGFNPGLIVLLVIGGIVLTFLIGNYVLYMYAQKTLPPKKKKPVSKKKMKRERLRQGVSAPGE 89
                   6789***************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0190134.0E-72289No hitNo description
PfamPF046891.8E-402589IPR006779DNA binding protein S1FA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 89 aa     Download sequence    Send to blast
MDDEFEFADH SPPSFQNMGN VVKDVETKGF NPGLIVLLVI GGIVLTFLIG NYVLYMYAQK  60
TLPPKKKKPV SKKKMKRERL RQGVSAPGE
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap29805.m001471
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002525167.12e-59DNA-binding protein S1FA
SwissprotQ423371e-16S1FA2_ARATH; DNA-binding protein S1FA2
TrEMBLB9SGP84e-58B9SGP8_RICCO; DNA-binding protein S1FA, putative
STRINGXP_002525167.17e-59(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54093355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37120.18e-08S1FA-like DNA-binding protein