PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29805.m001544
Common NameLOC8283331, RCOM_0820580
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family G2-like
Protein Properties Length: 336aa    MW: 36754.3 Da    PI: 7.7047
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29805.m001544genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like107.85.9e-3449103155
        G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                    k+rlrWt+eLHerFv+av+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl
  29805.m001544  49 KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 103
                    79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.48546106IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.5E-3248104IPR009057Homeodomain-like
SuperFamilySSF466898.78E-1848103IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-2549104IPR006447Myb domain, plants
PfamPF002491.4E-951102IPR001005SANT/Myb domain
PfamPF143791.8E-23135181IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MYQLKSVPSS SLVHKSSLVH GQHLDCGASR MDAINGENSL NNNPSLASKQ RLRWTHELHE  60
RFVDAVAQLG GPDRATPKGV LRVMGVQGLT IYHVKSHLQK YRLAKYLPDS SSDGKKADKK  120
ETGDMLSNLD GSSGMQITEA LKLQMEVQKR LHEQLEVQRQ LQLRIEAQGK YLKKIIEEQQ  180
RLSGVLGEVP GAVAAAPVSG DNCPESDNKT DPATPAPTSE SPIQDKAAKE RAPAKSLSID  240
ESFSSRHEPL TPDSRCNVGS PAESPKGERS MKKQRVCMGT SYGKSEMVLT HQILESSLNS  300
YPQPHSLFLS REQFDPSSGL STGNDDHIEK VPGSDP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-2349106259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-2349106259Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A2e-2349106158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-2349106158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-2349106158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-2349106158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-2349106259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-2349106259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-2349106259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-2349106259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-2349106259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-2349106259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00252DAPTransfer from AT2G01060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap29805.m001544
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025014210.10.0uncharacterized protein LOC8283331
SwissprotQ9SJW01e-135PHL7_ARATH; Myb family transcription factor PHL7
TrEMBLB9SGW90.0B9SGW9_RICCO; Transcription factor, putative
STRINGXP_002525238.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF86103343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01060.11e-105G2-like family protein